Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_K11
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    29   3.2  
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    28   4.2  
02_04_0292 + 21642544-21642726                                         27   7.4  
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    27   9.8  
01_06_1807 - 40021733-40021987                                         27   9.8  

>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 233 LHPTHTIRRYMSSVMDLEIHYFEQISNL 150
           + PT T+RR M++V  L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356


>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 245 YDKVTVSRWRQVHEYFKG--S*SRCIICKK--TRSDIVSCVIIMLK 370
           Y  V    WR++HE++KG    SR +IC    +RS IV    + LK
Sbjct: 111 YALVPQEVWRKLHEWYKGGPELSRRVICSSPTSRSYIVDVYPLRLK 156


>02_04_0292 + 21642544-21642726
          Length = 60

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 227 PTHTIRRYMSSVMDLEIHYFEQ 162
           P  T+RRY S++ DL  H FE+
Sbjct: 18  PPDTVRRYESAISDLAGHGFEE 39


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 57  NKLKVLLYTRHSLSWE 104
           NKLKV ++ RH+L+W+
Sbjct: 905 NKLKVSIWLRHTLNWQ 920


>01_06_1807 - 40021733-40021987
          Length = 84

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 218 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 114
           T+RRY S++ DL  H FE+   L    +  +Q+ +
Sbjct: 45  TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,060
Number of Sequences: 37544
Number of extensions: 287025
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)