Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K08
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 29 0.36
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 2.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 2.5
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 3.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 4.4
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 5.8
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 5.8
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.8
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 7.7
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 7.7
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.1 bits (62), Expect = 0.36
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +2
Query: 11 KHSNMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRS 190
K+SN+ + I V + N ILPD+ Y + +H +P T + ERS
Sbjct: 679 KYSNVSFEKIDVAERTCTISLNAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERSSAF 738
Query: 191 VGETLHHILHGNDNKHEQDDNSSK 262
E +++ + + +Q +S K
Sbjct: 739 NDEQFNYVFNTLTSISDQCISSHK 762
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 2 TRVKHSNMRYLVILVLAAVWMVEGNPMILPDN 97
TR+ ++ ++++L++ VW + G PDN
Sbjct: 155 TRLAGTSFTFILMLIILIVWAIVGGIYRAPDN 186
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 158 QLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELPDTSCWSV 12
Q D+ERL EYR++ R Q D+ +R P + D + W+V
Sbjct: 200 QSVDAERL---AEEYREKYGRSQTVVGDTSNVPQRLLLPSVNDPNIWAV 245
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 215 EYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESS 78
E F P F L ++ + + L+D+ L G QNS + SS
Sbjct: 275 ELPNPFVPFFDLDSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 112 EIKIVVIRQNHRIPFYHPNGSQHQNYQIPHVGV 14
E+++ + RQN+ + +HP S ++ H G+
Sbjct: 555 ELQLTMFRQNNMLTEFHPYSSNPSDWFTLHHGI 587
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -2
Query: 167 SCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS 60
S + + R R P +Y +QN ++E + PS
Sbjct: 164 SARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPS 199
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = -2
Query: 155 LEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELP 33
+E + P + +++ Q + S + K++P+PE+P
Sbjct: 210 IESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVP 250
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 227 DNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSAV 343
DN+H+Q + K +E GIEH + Q I AV
Sbjct: 557 DNQHKQQWQAPSYKPLISEFFPMGIEHFIETAQSIVMAV 595
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 7.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -3
Query: 148 IRKDSEDLVMNTEIKIVVIRQNHRIPFYHPNG---SQHQN--YQIPHVGVFN 8
+RK++E+ V + I V+ N PF N +H N + I H FN
Sbjct: 357 LRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAITHTASFN 408
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 7.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 206 GAFH-PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS-KRQPTPELP 33
G+F+ P ++S ++ + + P Y D+N + A+SS LPS P+ P
Sbjct: 114 GSFNLPNSNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCP 173
Query: 32 DT 27
T
Sbjct: 174 TT 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,002
Number of Sequences: 5004
Number of extensions: 43238
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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