Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K08
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 1.9
01_02_0063 - 10746968-10747783,10747995-10748222 29 2.5
08_02_0796 - 21300251-21300373,21300846-21301721 28 3.3
08_02_0158 - 13392323-13392545,13392618-13392739 28 3.3
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 28 3.3
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 28 4.4
12_02_0819 + 23432681-23432998,23433118-23433348 27 5.8
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 27 5.8
12_02_0326 + 17555731-17556387 27 7.6
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 27 7.6
01_05_0289 + 20482472-20482603,20483175-20483345,20483501-204835... 27 7.6
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490... 27 7.6
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 158 QLEDSERLRGPGHEYRDQNSRYQAESS 78
+LE SER R P YR Q+S+ Q SS
Sbjct: 421 RLESSERQRPPSQSYRPQSSQGQRPSS 447
>01_02_0063 - 10746968-10747783,10747995-10748222
Length = 347
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 122 HEYRDQNSRYQAESSDSLLPSKRQPTPE 39
HEY D + + ++ SDSLL + P PE
Sbjct: 303 HEYADNATLWDSDFSDSLLKLSQLPMPE 330
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 158 QLEDSERLRGPGHEYRDQNSRYQAESSDS 72
Q +++R+RGPGH + D + +S DS
Sbjct: 145 QSPETDRVRGPGHHHDDDAAADDDDSEDS 173
>08_02_0158 - 13392323-13392545,13392618-13392739
Length = 114
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 310 TQRAAENYERSQSTTGNINTFSIPTRHPMYV-DQLTNF 420
T R+ +N S+S TG+ N F++ HP V D + ++
Sbjct: 30 TSRSTDNSMTSRSITGSNNPFALQIEHPPVVHDDIASY 67
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -2
Query: 218 GEYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSK---RQP 48
G GG F +S+ + + E E++ H YR R E L S+ +
Sbjct: 315 GSVGGTFDLHYSIWGKEGATRREQMEKIIPLDHGYR-YYIRGAMEKHLLLARSRGEGEED 373
Query: 47 TPELPDTSCWSV 12
TPE PD C+S+
Sbjct: 374 TPEEPDLECFSL 385
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 130 DLVMNTEIKIVVIRQNHRIPFYH-PNGSQHQ 41
DL T++ IVV HRIP YH N SQ Q
Sbjct: 827 DLSRKTDLVIVVHNLAHRIPQYHQSNTSQPQ 857
>12_02_0819 + 23432681-23432998,23433118-23433348
Length = 182
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 29 YLVILVLAAVWMVEGNPMILPD--NDYFDLGIHDQVLG 136
Y V AA W V G +LP+ +FD G HDQ G
Sbjct: 73 YSAFEVAAAAWEVAGGATLLPEAMQLWFDFG-HDQGFG 109
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 389 WRVGMLNVFIFPVVL*LRS*FSAALCVRVR 300
W +G +NV IFPV L L S F LC +R
Sbjct: 35 WSLGKINVLIFPVDLFLGSYF---LCFTIR 61
>12_02_0326 + 17555731-17556387
Length = 218
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 203 LHHILHGNDNKHEQDDNSSKPKHPAA 280
LH H +HE+DDN P +PA+
Sbjct: 72 LHLQPHHPKPEHEEDDNDHNPSNPAS 97
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 116 YRDQNSRYQAESSDSLLPSKRQPTPELP 33
Y D+ SR+++ SSD L P P +LP
Sbjct: 67 YLDELSRWESLSSDVLAPLPAAPAADLP 94
>01_05_0289 +
20482472-20482603,20483175-20483345,20483501-20483530,
20483640-20483847,20483952-20484033,20484128-20484236,
20484329-20484745
Length = 382
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 20 NMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRSV 193
N ++L + V+G +L ++ H V GV P L+ Y F SVR++
Sbjct: 69 NFKWLDGFTIQGTGTVDGQSTLLRSVSPANVSQHWYVSGVKPTLIRFYSSFNVSVRNI 126
>01_01_0646 +
4904790-4904996,4905437-4905483,4905623-4905662,
4905770-4905970,4906260-4906472,4906561-4906629,
4906711-4906840,4906934-4906974,4907063-4907287,
4907575-4907745,4908713-4908778
Length = 469
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = -1
Query: 432 HTSHKISQLIYVHRMACRYA--------KRIYIPSGALTALVIFCSPLCP 307
+T ++Q I VH+ + R +R+Y S + A ++ C LCP
Sbjct: 90 NTDDTVTQKIVVHKTSARGTHFRRAGPRQRVYFQSDEVNAAIVTCGGLCP 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,173
Number of Sequences: 37544
Number of extensions: 276208
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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