Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K08
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-7|CAA94292.3| 431|Caenorhabditis elegans Hypothetical pr... 31 0.32
U41029-2|AAL65785.1| 192|Caenorhabditis elegans Hypothetical pr... 29 1.7
U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical pr... 29 1.7
DQ407523-1|ABD85015.1| 856|Caenorhabditis elegans OGA-1c protein. 29 1.7
DQ407522-1|ABD85014.1| 854|Caenorhabditis elegans OGA-1b protein. 29 1.7
DQ407521-1|ABD85013.1| 870|Caenorhabditis elegans OGA-1d protein. 29 1.7
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 27 5.1
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 27 9.0
U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical pr... 27 9.0
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 27 9.0
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 27 9.0
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 27 9.0
>Z70286-7|CAA94292.3| 431|Caenorhabditis elegans Hypothetical
protein K08C7.1 protein.
Length = 431
Score = 31.5 bits (68), Expect = 0.32
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 444 VVIFHTSHKISQLIYVHRMACRYAKRIYIPSGALTALVIFCSPLCPCSIPFLTIS 280
+VIF T H ++ +I V R A+ ++ + T V+F + L P I FL S
Sbjct: 331 IVIFITIHGVAIIIIVKTQTYRSAEHNHVLANGNTLCVVFSTSLQPLLIKFLVQS 385
>U41029-2|AAL65785.1| 192|Caenorhabditis elegans Hypothetical
protein F47G3.2 protein.
Length = 192
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 313 VSVFDTLSDDLCSRMLGFRTIVVLFMLVVITMENMVE 203
V VFDT S R+L F TIV F +++++ M+E
Sbjct: 12 VVVFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLE 48
>U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical
protein T20B5.3 protein.
Length = 837
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 35 VILVLAAVWMVEGNPMILPDNDYFD 109
V+L+ A WM++GN + P+N+ F+
Sbjct: 543 VLLIAVARWMMQGNALDNPENNLFE 567
>DQ407523-1|ABD85015.1| 856|Caenorhabditis elegans OGA-1c protein.
Length = 856
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 35 VILVLAAVWMVEGNPMILPDNDYFD 109
V+L+ A WM++GN + P+N+ F+
Sbjct: 560 VLLIAVARWMMQGNALDNPENNLFE 584
>DQ407522-1|ABD85014.1| 854|Caenorhabditis elegans OGA-1b protein.
Length = 854
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 35 VILVLAAVWMVEGNPMILPDNDYFD 109
V+L+ A WM++GN + P+N+ F+
Sbjct: 560 VLLIAVARWMMQGNALDNPENNLFE 584
>DQ407521-1|ABD85013.1| 870|Caenorhabditis elegans OGA-1d protein.
Length = 870
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 35 VILVLAAVWMVEGNPMILPDNDYFD 109
V+L+ A WM++GN + P+N+ F+
Sbjct: 576 VLLIAVARWMMQGNALDNPENNLFE 600
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 228 TTSMNRTTIVRNPSILLQRSSERVSNTDTKGCRKLRAQSKHH 353
T+ + ++ N S+ QR+ ++ +D+KG RK + HH
Sbjct: 328 TSESSNGSVYGNQSLSPQRNGKKYHPSDSKGNRKEPGKGAHH 369
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -3
Query: 76 IPFYH--PNGSQHQNYQIPHV 20
+P +H P+ HQ+YQ+PH+
Sbjct: 19 VPMHHVYPSHHHHQHYQLPHL 39
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -3
Query: 76 IPFYH--PNGSQHQNYQIPHV 20
+P +H P+ HQ+YQ+PH+
Sbjct: 19 VPMHHVYPSHHHHQHYQLPHL 39
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -3
Query: 76 IPFYH--PNGSQHQNYQIPHV 20
+P +H P+ HQ+YQ+PH+
Sbjct: 19 VPMHHVYPSHHHHQHYQLPHL 39
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 203 LHHILHGNDNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQK 328
LH+++ K ++ +NS + A ++R+GIE ++ L+K
Sbjct: 677 LHNLVEMVAQKGKEIENSQQYLDSLAHLIRQGIEAANEALRK 718
>U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical
protein F56F10.4 protein.
Length = 958
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 444 VVIFHTSHKISQLIYVHRMAC 382
V H SH+I+ ++Y+H+ C
Sbjct: 613 VFSMHPSHRITDIVYLHKYHC 633
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 151 KIRKDSEDLVMNTEIKIVVIRQNH 80
K+R+D ED +N+E + +R+ H
Sbjct: 1183 KLRQDLEDAAINSETSMAALRKKH 1206
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 50 AAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRSVGETLHHILHGND 229
AA +V+ + D ++ I D+++ ++ + R R +GE H + H N
Sbjct: 2484 AAERLVQSAQQEMIARDDRNIAISDRLVNGIAQVMDAQEEVLRKERELGEARHKLAHLNK 2543
Query: 230 NKHEQD 247
++E+D
Sbjct: 2544 ARYERD 2549
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 50 AAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRSVGETLHHILHGND 229
AA +V+ + D ++ I D+++ ++ + R R +GE H + H N
Sbjct: 2484 AAERLVQSAQQEMIARDDRNIAISDRLVNGIAQVMDAQEEVLRKERELGEARHKLAHLNK 2543
Query: 230 NKHEQD 247
++E+D
Sbjct: 2544 ARYERD 2549
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,088
Number of Sequences: 27780
Number of extensions: 240423
Number of successful extensions: 862
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -