Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K05
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 160 4e-40
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 155 2e-38
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 0.94
03_01_0548 + 4099386-4099847,4100435-4101316 28 2.9
03_01_0547 + 4093196-4093657,4094267-4095148 28 2.9
03_01_0544 + 4082528-4082989,4083585-4084466 28 2.9
03_01_0543 + 4076981-4077442,4078145-4079026 28 2.9
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 5.0
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 5.0
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 27 6.6
10_02_0110 - 5371536-5372882 27 8.7
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 27 8.7
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 27 8.7
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 160 bits (389), Expect = 4e-40
Identities = 75/99 (75%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Frame = +2
Query: 140 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 316
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 317 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEKPLQVLV 433
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT P+QV+V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIV 108
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 155 bits (375), Expect = 2e-38
Identities = 72/98 (73%), Positives = 84/98 (85%), Gaps = 1/98 (1%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 319
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 320 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEKPLQVLV 433
LMMHGRNNGKK+MAVRIVKHA EIIHLLT P+QV+V
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIV 109
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 0.94
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 71 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 244
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 299 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 409
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 175 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 303
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 27.1 bits (57), Expect = 6.6
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 8 GDVIIRKLRIKV*NMAEENWTEEVADAGGMVVDNMP-LPQPADIPEIKLFGRWSCYDVQV 184
G+V I K NM E E+ M N+P L P + +++FG S VQ
Sbjct: 1106 GEVFINLSPTKCWNMVRERLNMEIRRQLNMGKSNLPTLQPPGSVDGLEMFGLLSPPIVQA 1165
Query: 185 SDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCP 295
+D+I +Y + PH + R +Q P
Sbjct: 1166 IWARDRDHICT--EYWRSRPHVLIEDPNNRHMLSQGP 1200
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 65 WTEEVADAGGMVVDNMPLPQPADIPEIKL 151
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 197 LQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERL 310
LQD+ V E YAKY P A A ++ A P+ R+
Sbjct: 122 LQDFKKVNEIYAKYFPAPAP--ARSTYQVAALPLNARI 157
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 212 SVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 325
S+K++Y + L G + CP+ R NS++
Sbjct: 1445 SLKQRYVRRLGFETGHIVDPDLGELLCPVCRRFANSIL 1482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,537
Number of Sequences: 37544
Number of extensions: 237649
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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