Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K01
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 266 1e-72
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 266 1e-72
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 176 2e-45
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 59 5e-10
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.16
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 1.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 2.0
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 3.4
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 26 4.5
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 6.0
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 7.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 7.9
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 266 bits (653), Expect = 1e-72
Identities = 124/188 (65%), Positives = 145/188 (77%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYD 189
VSE S LSKSPNKHNR+FM A+PM E L I+ G VNPRDDFK RAR ++D++ +D
Sbjct: 567 VSEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWD 626
Query: 190 LTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRF 369
+T+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RF
Sbjct: 627 VTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRF 686
Query: 370 NIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 549
NI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY V
Sbjct: 687 NILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSV 746
Query: 550 LNRRRGHV 573
LN++RGHV
Sbjct: 747 LNKKRGHV 754
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 266 bits (653), Expect = 1e-72
Identities = 124/188 (65%), Positives = 145/188 (77%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYD 189
VSE S LSKSPNKHNR+FM A+PM E L I+ G VNPRDDFK RAR ++D++ +D
Sbjct: 567 VSEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWD 626
Query: 190 LTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRF 369
+T+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RF
Sbjct: 627 VTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRF 686
Query: 370 NIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 549
NI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY V
Sbjct: 687 NILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSV 746
Query: 550 LNRRRGHV 573
LN++RGHV
Sbjct: 747 LNKKRGHV 754
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 176 bits (428), Expect = 2e-45
Identities = 83/190 (43%), Positives = 115/190 (60%), Gaps = 4/190 (2%)
Frame = +1
Query: 16 EESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLT 195
+ S C S +PNK NR+ M +P+ +G+ DI++GKVN K + + Y++DL
Sbjct: 681 DTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLL 740
Query: 196 EARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGAMAEENLRGV 363
+R IW FGP+ G NIL D + LN +K+ + GFQW +EG + +E +R V
Sbjct: 741 ASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNV 800
Query: 364 RFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIY 543
F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY
Sbjct: 801 NFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIY 860
Query: 544 GVLNRRRGHV 573
+L RRRGHV
Sbjct: 861 DLLTRRRGHV 870
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 58.8 bits (136), Expect = 5e-10
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Frame = +1
Query: 37 LSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK--- 207
+S + +K NR + ++ + + + E + K F R L ++ DL E +
Sbjct: 696 VSSNFSKKNRNVVVSESLTKSMEEVLTPEK------FYERLSKLLEEENSDLGELKNHLD 749
Query: 208 -IWCFGPEGTGPNILVDCSKGVQYL-----------NEIKDSVVAGFQWAAKEGAMAEEN 351
I FGP+ GPNIL D +K ++ +++ + VV FQ +G + E
Sbjct: 750 SIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEP 809
Query: 352 LRGV-----RFNIYDVTLHTDAIHRGG----GQIIPTTRRCLYACLLTAQPRLMEPVYLC 504
++G+ +F+I D + + + GQ+I + + L PRLM +Y C
Sbjct: 810 VQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSC 869
Query: 505 EIQCPEVAVGGIYGVLNRRRGHV 573
++Q +G +YGV+++RRG V
Sbjct: 870 DVQATSEVLGRVYGVVSKRRGRV 892
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 30.7 bits (66), Expect = 0.16
Identities = 21/88 (23%), Positives = 36/88 (40%)
Frame = +1
Query: 310 FQWAAKEGAMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 489
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 490 PVYLCEIQCPEVAVGGIYGVLNRRRGHV 573
P+ I P GG+ G L++R+ +
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATI 704
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 330 FLGGPLEPGDDRVLDLVQVLHTL 262
F+G PL PGD V LV+++ L
Sbjct: 220 FIGRPLFPGDSSVEQLVEIIRVL 242
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 100 LPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK 207
LPE ID+GK++ DD KT + D + K
Sbjct: 194 LPEKIDEGKLSDVDDGKTYICWRGDSQYVSINRLEK 229
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 190 LTEARKIWCFGPEGTGPNILVD--CSKGVQYLNE 285
L E + GP G+G ++LVD S+ Q +NE
Sbjct: 572 LGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 37 LSKSPNKHNRLFMKAQPMPEGL 102
++KS KHN+L K +P+P L
Sbjct: 243 INKSVKKHNKLVKKHKPLPSTL 264
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 327 LGG-PLEPGDDRVLDLVQVLHTLRAVDEDVRSGALGAEAPDLTR 199
LGG PL G D V L +LH L DE+ S + A + R
Sbjct: 223 LGGTPLFKGKDFVHQLNLILHQLGTPDEETLSHISSSRAQEYVR 266
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 437 VVGMI*PPPL*MASV*RVTS*MLNRTPLKFSSAMAPSLAA 318
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 104 GRPSGMGWAFMKRRLCLL 51
G P G+ WA M R+C L
Sbjct: 228 GFPGGVAWAMMVARICQL 245
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 527 ATSGHWISQRYTGSISLGCAVNRHAYR 447
A +G +IS YTG+ +L V RH R
Sbjct: 437 ANTGDYISDLYTGTPALKGDVTRHGTR 463
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 112 IDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNIL 249
+++ K R+ + Y + +T ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,965
Number of Sequences: 5004
Number of extensions: 39625
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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