Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_K01
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 326 5e-90
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 321 2e-88
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 176 8e-45
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 172 1e-43
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL132865-7|CAB60598.1| 234|Caenorhabditis elegans Hypothetical ... 29 3.1
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 4.1
U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical pr... 28 4.1
U97004-5|AAO26009.1| 240|Caenorhabditis elegans Hypothetical pr... 28 4.1
U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z32683-10|CAA83625.1| 381|Caenorhabditis elegans Hypothetical p... 28 5.4
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL021066-2|CAH10790.1| 124|Caenorhabditis elegans Hypothetical ... 27 7.2
AC006701-3|AAF60394.2| 198|Caenorhabditis elegans Mediator prot... 27 9.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 326 bits (802), Expect = 5e-90
Identities = 143/188 (76%), Positives = 167/188 (88%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYD 189
V ES+Q+CLSKSPNKHNRL AQPMP+GL +DI+ G VN RD+FK RA+ L++KYEYD
Sbjct: 577 VQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYD 636
Query: 190 LTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRF 369
+TEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRF
Sbjct: 637 VTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRF 696
Query: 370 NIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 549
N++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGV
Sbjct: 697 NVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGV 756
Query: 550 LNRRRGHV 573
LNRRRGHV
Sbjct: 757 LNRRRGHV 764
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 321 bits (789), Expect = 2e-88
Identities = 141/188 (75%), Positives = 165/188 (87%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYD 189
V ES+Q+CLSKSPNKHNRL AQPMP+GL +DI+ G V+ RD+FK RA+Y +KYEY
Sbjct: 577 VQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYA 636
Query: 190 LTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRF 369
+TEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRF
Sbjct: 637 VTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRF 696
Query: 370 NIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 549
N++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGV
Sbjct: 697 NVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGV 756
Query: 550 LNRRRGHV 573
LNRRRGHV
Sbjct: 757 LNRRRGHV 764
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 176 bits (429), Expect = 8e-45
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYD 189
V E S C +++PNK N++ M A+P+ + L EDI++ V + + + KY +D
Sbjct: 670 VIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWD 729
Query: 190 LTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGAMAEENLR 357
L AR IW FGP+ TGPNIL+D + + L+ +++S+V GFQWA +EG + EE +R
Sbjct: 730 LLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIR 789
Query: 358 GVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGG 537
V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V
Sbjct: 790 QVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAA 849
Query: 538 IYGVLNRRRGHV 573
+Y VL +RRGHV
Sbjct: 850 VYTVLAKRRGHV 861
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 172 bits (419), Expect = 1e-43
Identities = 82/192 (42%), Positives = 119/192 (61%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYD 189
V E S C +++PNK N++ M A+P+ + L EDI++ V + + + KY +D
Sbjct: 545 VIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWD 604
Query: 190 LTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGAMAEENLR 357
L AR IW FG + TGPNIL+D + + L+ +++S+V GFQWA +EG + EE +R
Sbjct: 605 LLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIR 664
Query: 358 GVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGG 537
V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V
Sbjct: 665 QVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAA 724
Query: 538 IYGVLNRRRGHV 573
+Y VL +RRGHV
Sbjct: 725 VYTVLAKRRGHV 736
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 41.5 bits (93), Expect = 4e-04
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Frame = +1
Query: 205 KIWCFGPEGTGPNILVDCSKGVQY----------LNEIKDSVVAGFQWAAKEGAMAEENL 354
+IW FGPE NIL + + + ++VAGF+ G + E +
Sbjct: 653 QIWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIM 712
Query: 355 RGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 528
G+ + ++V AI GGQ++ + A RL+ +Y C + A
Sbjct: 713 HGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQA 769
Query: 529 VGGIYGVLNRRRGHV 573
+G ++ VL++R+ V
Sbjct: 770 LGKVHAVLSQRKSKV 784
>AL132865-7|CAB60598.1| 234|Caenorhabditis elegans Hypothetical
protein Y62E10A.10 protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 115 DDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKD 294
++G+ P+ F R +YL + L++A++ GP P+ + + KG +N I
Sbjct: 61 ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPMDPSQMTEMLKG-NMMNMIPM 119
Query: 295 SVVAGF 312
VV G+
Sbjct: 120 IVVGGW 125
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 415 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 561
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
>U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical
protein R08E5.2c protein.
Length = 304
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 444 MPVRVSVDRAA--QAYGTRVPLRDPVSGGGG 530
MP +SV+R A +AYG V L DP G G
Sbjct: 98 MPATMSVERRAMLRAYGAEVILSDPAEGHPG 128
>U97004-5|AAO26009.1| 240|Caenorhabditis elegans Hypothetical
protein R08E5.2b protein.
Length = 240
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 444 MPVRVSVDRAA--QAYGTRVPLRDPVSGGGG 530
MP +SV+R A +AYG V L DP G G
Sbjct: 1 MPATMSVERRAMLRAYGAEVILSDPAEGHPG 31
>U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical
protein R08E5.2a protein.
Length = 337
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 444 MPVRVSVDRAA--QAYGTRVPLRDPVSGGGG 530
MP +SV+R A +AYG V L DP G G
Sbjct: 98 MPATMSVERRAMLRAYGAEVILSDPAEGHPG 128
>Z32683-10|CAA83625.1| 381|Caenorhabditis elegans Hypothetical
protein R07E5.3 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 166 LSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAE 345
L D++E+D+++ PE NI + G ++++ I S+ QW + A +E
Sbjct: 271 LVDQFEWDMSDPNN----SPEEFSRNICKELGLGGEFMSGIAYSIRGQLQWNQRTYAFSE 326
Query: 346 ENLRGV 363
L V
Sbjct: 327 SPLATV 332
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 343 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 474
+ NL +++ TLH +HR IP R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346
>AL021066-2|CAH10790.1| 124|Caenorhabditis elegans Hypothetical
protein H31B20.2 protein.
Length = 124
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 10 VSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDF 147
V +E D+M ++ P+K + L ++ Q + D D+ K DDF
Sbjct: 80 VEQEEDEMIRTEGPSKASELPIREQSKRKEAVSDADESK-QDEDDF 124
>AC006701-3|AAF60394.2| 198|Caenorhabditis elegans Mediator protein
20 protein.
Length = 198
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 432 WNDLTATSVNGVSVKGDVINVESNPSQVLL 343
W T+ G +VKG V+ +E +PS +++
Sbjct: 115 WMIRVGTATQGTTVKGVVVEIEYDPSIIVI 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,779
Number of Sequences: 27780
Number of extensions: 239870
Number of successful extensions: 872
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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