Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J21
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.23 
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   1.6  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   2.1  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   4.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.9  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   4.9  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   8.6  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 117 RPQAEFERNARIIAQDSDVKEDSYRFNYETENGIKAEEQGREVDGIEAQGGFQYTGDDRQ 296
           R +A  +R  + +  +++V ED      E E   + +E GRE   IE + G  Y GDDR+
Sbjct: 135 RKRARHDRRNQFLDIEAEVDED------EEELEDEEDEIGREDGFIEEEVGADYVGDDRR 188


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 156 AQDSDVKEDSYRFNYETENGIKAEEQGREVDGIEA 260
           A++++  ED++  NYE E+ +  +EQ ++ +G+ +
Sbjct: 40  ARNNEDNEDNHHINYEDESDVGTDEQ-KQQEGVNS 73


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 584 ARLLVKGYIQSMACLELVRLSVTGGGLSSRVI 489
           AR L+K YIQS+  + L + + T  G+SS +I
Sbjct: 636 ARTLIKPYIQSIIHVILPKAADTSPGVSSAII 667


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 HFPTPPPTPEAILKALEQNARDEAAG 428
           ++P PPPT    + AL + +RD+  G
Sbjct: 353 NYPPPPPTENKAMPALLEQSRDQNFG 378


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 413 ASVLFECLQDGFRGRWRGGEVG 348
           A VL E +   F+GR R GEVG
Sbjct: 296 AVVLLEDVDSAFQGRERSGEVG 317


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 333 NHLDRLRN*QRRSDDHHRCIGNHLEPQYHRPLCLALQP*CRSPSH 199
           NH D +      S D HR +G +++P       +   P C S S+
Sbjct: 178 NHYDIVIEYHTTSSDQHRVVGAYVKPVSKESTLVDGNPVCSSSSN 222


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 360 TPPPTPEAILKALEQ 404
           TP P PEAI+K +EQ
Sbjct: 16  TPSPAPEAIVKDIEQ 30


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = -2

Query: 521 VTGGGLSSRVILLS*T-SVTIFTGGVLTIVNDASCFIA-SVLFECLQDGFRGRWRGGEVG 348
           +T    SSR+I+   T S+  F GGVL       CFI  S L    +      +R  + G
Sbjct: 286 LTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSG 345

Query: 347 TLRLETTLTGCVTDSVDLTIITGVLETTLSLNTID 243
            L      T  V   +D   IT V++ T   NT D
Sbjct: 346 IL----FATDVVARGMDFPNITQVVQITGPSNTDD 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,476
Number of Sequences: 5004
Number of extensions: 43633
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)