Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J21
(612 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL590551-1|CAH71650.1| 600|Homo sapiens fibronectin type III do... 32 1.4
BC150273-1|AAI50274.1| 1422|Homo sapiens YEATS domain containing... 30 7.4
BC053863-1|AAH53863.1| 709|Homo sapiens YTH domain containing 1... 30 7.4
BC041119-1|AAH41119.1| 727|Homo sapiens YTH domain containing 1... 30 7.4
AK056430-1|BAB71181.1| 658|Homo sapiens protein ( Homo sapiens ... 30 7.4
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 30 7.4
AC074378-1|AAY41024.1| 658|Homo sapiens unknown protein. 30 7.4
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 30 7.4
AB033023-1|BAA86511.1| 1487|Homo sapiens KIAA1197 protein protein. 30 7.4
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 30 7.4
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 30 7.4
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 30 7.4
>AL590551-1|CAH71650.1| 600|Homo sapiens fibronectin type III
domain containing 1 protein.
Length = 600
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/74 (25%), Positives = 28/74 (37%)
Frame = +1
Query: 157 PRTQTLRRTHTDLTMRRRTASRLKSKAERSMVLRLKVVSNTPVMIVRSTLSVTQPVKVVS 336
P T T++ T T + T R + R + + P VR+T T
Sbjct: 152 PPTTTMQPTTTTTPLPTTTTPRPTTATTRRTTTTRRTTTRRPTTTVRTTTRTTTTTTPTP 211
Query: 337 SLRVPTSPPRHLPR 378
+ +PT PP L R
Sbjct: 212 TTPIPTCPPGTLER 225
>BC150273-1|AAI50274.1| 1422|Homo sapiens YEATS domain containing 2
protein.
Length = 1422
Score = 29.9 bits (64), Expect = 7.4
Identities = 32/118 (27%), Positives = 49/118 (41%)
Frame = +1
Query: 112 RTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRLKSKAERSMVLRLKVVSNTPVMI 291
R P L +LE RT T T +T S + A ++ V N P
Sbjct: 393 RHTPFYALPSSLE---RTPTKMTTSQKVTFCSHGNSAFQPIASSCKIVPQSQVPN-PESP 448
Query: 292 VRSTLSVTQPVKVVSSLRVPTSPPRHLPRKPS*RHSNRTLAMKQLASLTMVNTPPVNM 465
+S +T K+VS + T P LPR P ++ + +KQ + +++N P V M
Sbjct: 449 GKSFQPITMSCKIVSGSPISTPSPSPLPRTP----TSTPVHVKQGTAGSVINNPYVIM 502
>BC053863-1|AAH53863.1| 709|Homo sapiens YTH domain containing 1
protein.
Length = 709
Score = 29.9 bits (64), Expect = 7.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 105 EQSHRPQAEFERNARIIAQDSDVKEDSYRFNYETENGIKAEEQGREVDGIEAQGGFQYTG 284
EQ + + E E + +D +V+ED+ E+G + EE+ E + E + +Y
Sbjct: 193 EQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQ 252
Query: 285 DDR 293
D+R
Sbjct: 253 DER 255
>BC041119-1|AAH41119.1| 727|Homo sapiens YTH domain containing 1
protein.
Length = 727
Score = 29.9 bits (64), Expect = 7.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 105 EQSHRPQAEFERNARIIAQDSDVKEDSYRFNYETENGIKAEEQGREVDGIEAQGGFQYTG 284
EQ + + E E + +D +V+ED+ E+G + EE+ E + E + +Y
Sbjct: 193 EQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQ 252
Query: 285 DDR 293
D+R
Sbjct: 253 DER 255
>AK056430-1|BAB71181.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ31868 fis, clone NT2RP7001962, highly similar to
Rattus norvegicus YT521 mRNA for RNA splicing-related
protein. ).
Length = 658
Score = 29.9 bits (64), Expect = 7.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 105 EQSHRPQAEFERNARIIAQDSDVKEDSYRFNYETENGIKAEEQGREVDGIEAQGGFQYTG 284
EQ + + E E + +D +V+ED+ E+G + EE+ E + E + +Y
Sbjct: 142 EQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQ 201
Query: 285 DDR 293
D+R
Sbjct: 202 DER 204
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 29.9 bits (64), Expect = 7.4
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +1
Query: 109 NRTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRL-----KSKAERSMVLRLKVVS 273
+RT+P + + P T R+ T L RRR+ SR + R+ V R + S
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913
Query: 274 NTPVMIVRSTLSVTQPV-KVVSSLRVPTSPPRHLPRKP 384
+ R + S T PV + S R PT+ R R P
Sbjct: 1914 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 1951
>AC074378-1|AAY41024.1| 658|Homo sapiens unknown protein.
Length = 658
Score = 29.9 bits (64), Expect = 7.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 105 EQSHRPQAEFERNARIIAQDSDVKEDSYRFNYETENGIKAEEQGREVDGIEAQGGFQYTG 284
EQ + + E E + +D +V+ED+ E+G + EE+ E + E + +Y
Sbjct: 142 EQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQ 201
Query: 285 DDR 293
D+R
Sbjct: 202 DER 204
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 29.9 bits (64), Expect = 7.4
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +1
Query: 109 NRTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRL-----KSKAERSMVLRLKVVS 273
+RT+P + + P T R+ T L RRR+ SR + R+ V R + S
Sbjct: 886 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 945
Query: 274 NTPVMIVRSTLSVTQPV-KVVSSLRVPTSPPRHLPRKP 384
+ R + S T PV + S R PT+ R R P
Sbjct: 946 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 983
>AB033023-1|BAA86511.1| 1487|Homo sapiens KIAA1197 protein protein.
Length = 1487
Score = 29.9 bits (64), Expect = 7.4
Identities = 32/118 (27%), Positives = 49/118 (41%)
Frame = +1
Query: 112 RTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRLKSKAERSMVLRLKVVSNTPVMI 291
R P L +LE RT T T +T S + A ++ V N P
Sbjct: 458 RHTPFYALPSSLE---RTPTKMTTSQKVTFCSHGNSAFQPIASSCKIVPQSQVPN-PESP 513
Query: 292 VRSTLSVTQPVKVVSSLRVPTSPPRHLPRKPS*RHSNRTLAMKQLASLTMVNTPPVNM 465
+S +T K+VS + T P LPR P ++ + +KQ + +++N P V M
Sbjct: 514 GKSFQPITMSCKIVSGSPISTPSPSPLPRTP----TSTPVHVKQGTAGSVINNPYVIM 567
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 29.9 bits (64), Expect = 7.4
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +1
Query: 109 NRTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRL-----KSKAERSMVLRLKVVS 273
+RT+P + + P T R+ T L RRR+ SR + R+ V R + S
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913
Query: 274 NTPVMIVRSTLSVTQPV-KVVSSLRVPTSPPRHLPRKP 384
+ R + S T PV + S R PT+ R R P
Sbjct: 1914 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 1951
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 29.9 bits (64), Expect = 7.4
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +1
Query: 109 NRTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRL-----KSKAERSMVLRLKVVS 273
+RT+P + + P T R+ T L RRR+ SR + R+ V R + S
Sbjct: 377 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 436
Query: 274 NTPVMIVRSTLSVTQPV-KVVSSLRVPTSPPRHLPRKP 384
+ R + S T PV + S R PT+ R R P
Sbjct: 437 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 474
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 29.9 bits (64), Expect = 7.4
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +1
Query: 109 NRTAPRLNLKGTLES*PRTQTLRRTHTDLTMRRRTASRL-----KSKAERSMVLRLKVVS 273
+RT+P + + P T R+ T L RRR+ SR + R+ V R + S
Sbjct: 1902 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1961
Query: 274 NTPVMIVRSTLSVTQPV-KVVSSLRVPTSPPRHLPRKP 384
+ R + S T PV + S R PT+ R R P
Sbjct: 1962 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 1999
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,651,642
Number of Sequences: 237096
Number of extensions: 1897434
Number of successful extensions: 6529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6510
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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