Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J18
(470 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 225 5e-59
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 225 5e-59
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 225 5e-59
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 118 8e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 54 2e-07
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 54 2e-07
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 54 2e-07
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 225 bits (551), Expect = 5e-59
Identities = 108/115 (93%), Positives = 110/115 (95%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
KAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP D
Sbjct: 29 KAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPND 88
Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKVKKERPRS 455
GCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 89 GCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 48.8 bits (111), Expect = 9e-06
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKSPH-GYEMEGEP 145
MGK RG+RTARK +HRR+Q+W DK++K H G ++ P
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANP 40
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 225 bits (551), Expect = 5e-59
Identities = 108/115 (93%), Positives = 110/115 (95%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
KAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP D
Sbjct: 29 KAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPND 88
Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKVKKERPRS 455
GCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 89 GCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 48.8 bits (111), Expect = 9e-06
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKSPH-GYEMEGEP 145
MGK RG+RTARK +HRR+Q+W DK++K H G ++ P
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANP 40
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 225 bits (551), Expect = 5e-59
Identities = 108/115 (93%), Positives = 110/115 (95%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
KAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP D
Sbjct: 29 KAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPND 88
Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKVKKERPRS 455
GCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 89 GCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 48.8 bits (111), Expect = 9e-06
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKSPH-GYEMEGEP 145
MGK RG+RTARK +HRR+Q+W DK++K H G ++ P
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANP 40
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 118 bits (285), Expect = 8e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = +3
Query: 276 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKVKKERPR 452
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 135 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 314
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 315 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 398
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 135 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 314
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 315 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 398
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 135 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 314
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 315 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 398
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 135 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 314
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 315 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 398
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 135 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 314
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 315 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 398
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 135 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 314
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 315 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 398
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,503,335
Number of Sequences: 237096
Number of extensions: 1807359
Number of successful extensions: 3654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3650
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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