Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J16
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...    77   2e-15
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   10.0 
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   10.0 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   10.0 

>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
 Frame = +1

Query: 85  MTTIKVNDEAEIINKLASYVEKISNDAIYNRGKFFIGLSGGSVVKYLCEGLPKVE-TDWS 261
           M+    +D + +   L ++V++ S  +I   G F + LSGGS+ K L EGL +    ++S
Sbjct: 1   MSVYSFSDVSLVAKALGAFVKEKSEASIKRHGVFTLALSGGSLPKVLAEGLAQQRGIEFS 60

Query: 262 KWTLAFCDERVVPESSSDSTFGTYMRDLI-------PKTSLKENQFVTIKQGVSVQEAAK 420
           KW + F DER+VP    +S +    + +        PK     N  +  +  +  Q  A 
Sbjct: 61  KWEVFFADERIVPLDDENSNYALCKKLIFDKFEGFDPKKIHTINPELLKENPIDPQNVAD 120

Query: 421 DYEDKL-H---KAXXXXXXXXXXXXXGMGPDGHTCSLFPGHAL*SE 546
           +YE +L H    +             G GPDGHTCSLFP H +  E
Sbjct: 121 EYEKQLVHVFANSSTVKVPVFDLLLLGCGPDGHTCSLFPDHEVLQE 166


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 361 LKENQFVTIKQGVSVQEAAK 420
           LKEN+F +I +G + +E AK
Sbjct: 217 LKENEFESINEGETEEEKAK 236


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 464 SSLIYFYLVWDQ 499
           +SL+YFY  WDQ
Sbjct: 72  TSLVYFYHAWDQ 83


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 271 LAFCDERVVPESSSDSTFGTYMRDLIPKTSLKENQFVTIKQGVSVQEAAKD 423
           L+  DE  V   ++D+TF + +  L    SLK   F    QG  +   A D
Sbjct: 517 LSCLDEECVMPKATDATFTSKLDALWRNKSLKYKPFKFADQGFILTHYAAD 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,889
Number of Sequences: 5004
Number of extensions: 38616
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)