Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J16
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0078 - 17093767-17093828,17094270-17094699,17095837-170959... 82 3e-16
07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158 79 2e-15
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 65 3e-11
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 38 0.007
11_06_0675 + 26139284-26139745,26139932-26139980,26140118-261402... 29 1.9
06_03_0998 - 26742608-26742802,26743137-26743325,26743600-267436... 28 5.8
12_02_0414 + 18824347-18825161,18826018-18828229 27 7.7
06_03_1047 - 27133869-27134345,27134444-27134701,27134841-271350... 27 7.7
>03_04_0078 -
17093767-17093828,17094270-17094699,17095837-17095972,
17096081-17096265
Length = 270
Score = 82.2 bits (194), Expect = 3e-16
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Frame = +1
Query: 115 EIINKLASYVEKISNDAIYNRGKFFIGLSGGSVVKY---LCEGLPKVETDWSKWTLAFCD 285
E+ LA Y+ ++S +I RG F I LSGG ++ + LCE DWSKW + + D
Sbjct: 25 EMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKWYIFWAD 84
Query: 286 ERVVPESSSDSTFGTYMRDLIPKTSLKENQFVTIKQGVSVQEAAKDYEDKLHKAXXXXXX 465
ER V ++ DS + + D + K + +I V+V++AA DYE + +
Sbjct: 85 ERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVEDAATDYEFVIRQLVKIRTV 144
Query: 466 XXXXX---------XXGMGPDGHTCSLFPGH 531
+G DGH SLFP H
Sbjct: 145 GVSESNDCPKFDLILLSIGSDGHVASLFPNH 175
>07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158
Length = 280
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Frame = +1
Query: 73 KPHNMTTIKVNDEA-EIINKLASYVEKISNDAIYNRGKFFIGLSGGSVVKYL---CEGLP 240
+P I++ + + E+ LA Y+ ++S ++ RG F I LSGG +V +L CE
Sbjct: 10 EPKRNNEIRIFESSDEMSTDLAEYISQVSEISVKERGYFAIALSGGPLVSFLGKLCEAPY 69
Query: 241 KVETDWSKWTLAFCDERVVPESSSDSTFGTYMRDLIPKTSLKENQFVTIKQGVSVQEAAK 420
DWSKW + + DER V ++ ++S + + K + +I +V++AA
Sbjct: 70 NKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAAT 129
Query: 421 DYEDKLHKAXXXXXXXXXXX---------XXGMGPDGHTCSLFPGH 531
DYE + + MG DGH SLFP H
Sbjct: 130 DYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNH 175
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 65.3 bits (152), Expect = 3e-11
Identities = 54/180 (30%), Positives = 72/180 (40%), Gaps = 34/180 (18%)
Frame = +1
Query: 109 EAEIINKLASYVEKISNDAIYNRGKFFIGLSGGSVVKY---LCEGLPKVETDWSKWTLAF 279
E ++ LA Y ++S RG F + LSGGS++K L E DWSKW + +
Sbjct: 26 EEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFW 85
Query: 280 CDERVVPESSSDSTFG----------------------TYMRDLIPKTSLKENQFVTIKQ 393
DERVVP+ DS + + L+ + Q I
Sbjct: 86 VDERVVPKDHEDSNYKLALDGFLSKCTRSVTKTLVLLIQFTEPLLLSVPIPTGQVYAIND 145
Query: 394 GVSVQEAAKDYEDKLHKAXXXXXXXXXXXX---------XGMGPDGHTCSLFPGHAL*SE 546
+S + AA DYE L + GMGPDGH SLFPGH L +E
Sbjct: 146 ALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNE 205
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 253 DWSKWTLAFCDERVVPESSSDSTFGTYMRDLIPKTS 360
+WSKW + + DERVVP+ +DS + M L+ K +
Sbjct: 236 EWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVA 271
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 487 GMGPDGHTCSLFPGHAL*SE 546
GMGPDGH SLFPGH + +E
Sbjct: 356 GMGPDGHVASLFPGHPVVNE 375
>11_06_0675 +
26139284-26139745,26139932-26139980,26140118-26140215,
26140378-26140588,26140707-26140947,26141051-26141216,
26141308-26141451
Length = 456
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 97 KVNDEAEIINKLASYVEKISNDAIYNRGKFFIGLSGGSVVKYL 225
++N+ E+ K ASYV +I D + N K L ++VK L
Sbjct: 205 QLNEMPEVAVKRASYVNRIPFDQLENEAKIISKLQHTNIVKLL 247
>06_03_0998 -
26742608-26742802,26743137-26743325,26743600-26743657,
26743990-26744056,26744368-26746504
Length = 881
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 376 IGSLSKKFLVLGLSCMYQMLNQSCSQVQLFHHRML 272
+ L++K V GLS +++ LN+ C + H RML
Sbjct: 681 VDPLNEKKWVQGLSAIHESLNKKCLPLCPMHARML 715
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 220 YLCEGLPKVETDWSKWTLAFCDERVVPE 303
Y EGL +V++D W L CD +P+
Sbjct: 321 YRLEGLNEVDSDKLLWQLVGCDRNELPQ 348
>06_03_1047 -
27133869-27134345,27134444-27134701,27134841-27135041,
27135242-27135584,27135674-27135732,27136256-27136581,
27136753-27136849,27137072-27137182,27137691-27138305,
27139578-27139880
Length = 929
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = -3
Query: 149 FSTYEASLFI---ISASSLTFIVVILCGF 72
F+ Y AS+F+ I+ S +TF+V LCG+
Sbjct: 481 FADYVASIFVPIVITLSMITFLVWFLCGW 509
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,643,228
Number of Sequences: 37544
Number of extensions: 214046
Number of successful extensions: 480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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