Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J15
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   224   8e-60
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   224   1e-59
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   4.2  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    26   5.5  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   5.5  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  224 bits (548), Expect = 8e-60
 Identities = 104/150 (69%), Positives = 121/150 (80%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 391
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 392 IPGLTDGEVPRRLGPKRASKIRKLFNLKKE 481
           IPGLTD  VP+RLGPKRASKIR+ FNL KE
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKE 150



 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +3

Query: 477 KKHDVRRYVVKR-LLPAKEGKENAKPRYKAPKIQRLVTPVVLQ 602
           K+ DVR++V++R ++P KEGK   KP  KAPKIQRLVTP  LQ
Sbjct: 149 KEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQ 188


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  224 bits (547), Expect = 1e-59
 Identities = 103/150 (68%), Positives = 121/150 (80%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 391
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 392 IPGLTDGEVPRRLGPKRASKIRKLFNLKKE 481
           IPGLTD  VP+RLGPKRASKIR+ FNL KE
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKE 150



 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +3

Query: 477 KKHDVRRYVVKR-LLPAKEGKENAKPRYKAPKIQRLVTPVVLQ 602
           K+ DVR++V++R ++P KEGK   KP  KAPKIQRLVTP  LQ
Sbjct: 149 KEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQ 188


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 276 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 193
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/62 (35%), Positives = 25/62 (40%)
 Frame = -3

Query: 534 CPLWQVKGVLQHSDAHRASFFKLNNLRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAK 355
           C   + K VL    A    F K N  R+L   L   +RG S S  P   C  LR  TR  
Sbjct: 41  CETLKYKPVLDEIIARSDCFLKENLARVLVHDLLMSKRGLSISNGPIKECI-LRHKTRLN 99

Query: 354 TE 349
            E
Sbjct: 100 AE 101


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 2   HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 124
           H G+KGL+       S+   G + +  ++ EH + + Y  R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 2   HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 124
           H G+KGL+       S+   G + +  ++ EH + + Y  R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,976
Number of Sequences: 5004
Number of extensions: 50873
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)