Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J14
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 105 4e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 53 3e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 46 3e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 34 0.010
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 33 0.023
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 29 0.28
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.38
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 29 0.50
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 0.87
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 3.5
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 4.6
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.6
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 8.1
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 8.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 105 bits (252), Expect = 4e-24
Identities = 43/90 (47%), Positives = 63/90 (70%)
Frame = +2
Query: 218 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 397
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 398 NFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 487
FP+YV + +K +G++ PTPIQ Q WP+AM
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAM 157
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.8 bits (121), Expect = 3e-08
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 245 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 421
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 422 AIKSMGYKDPTPIQAQGWP 478
I S+GY+ PT IQAQ P
Sbjct: 432 VINSLGYEKPTSIQAQAIP 450
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.0 bits (104), Expect = 3e-06
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 329 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 487
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ P+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 36.3 bits (80), Expect = 0.002
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 386 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 487
F+E D +C+A + +G+K PTPIQ + P+ +
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVL 81
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 34.3 bits (75), Expect = 0.010
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 344 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPI 481
V VSG ++ P+ F ++ Q IK GY PTP+Q PI
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.023
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 326 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWP 478
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA WP
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWP 197
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.5 bits (63), Expect = 0.28
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 314 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWP 478
E ED R + V ++ + IE F + + + +AIK MG++ T IQ + P
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIP 121
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.38
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -3
Query: 427 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 308
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.50
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 341 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQ 469
E+T S E N + FEE N + + + I + GY+ P+ +Q++
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 0.87
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 386 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPI 481
F+ N ++ A+ + G+K TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 308 PYEVEDYRNKHEVTVSGVE-VPNPI 379
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 383 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 487
+F+ + +AI G+K PTPIQ + P+ +
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLL 104
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-PDYVCQAIKSMGYKD 448
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 287 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 445
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 386 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 487
FE+ + I G++ P+PIQ + PIA+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIAL 79
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 248 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 376
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,544
Number of Sequences: 5004
Number of extensions: 32953
Number of successful extensions: 148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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