Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J12
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    28   0.77 
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    28   1.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   5.4  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   7.2  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   7.2  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.5  

>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 171 DPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFSTVLGAPRS 299
           +PFKS   LVDCG      Y+ L   + L    F  +   P S
Sbjct: 109 NPFKSWAKLVDCGDIPVTTYDILKAMDQLESAYFQLIARKPSS 151


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 87  LAFLLAVFEIGTCLRCYQCNSQQDPGCGDPFKS 185
           + +++ ++  GT    Y CN+    GC D FK+
Sbjct: 856 MTWVVIMYGFGTGNLSYDCNAHYHAGCNDVFKA 888


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 262 LKSSAPSWEPLDLVT-RSSPIPD 327
           ++++AP WEP+D  +   SP+P+
Sbjct: 919 VEANAPPWEPIDFSSLLESPVPN 941


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -3

Query: 334 TTDPVSVTIL*QDLGAPKTVL 272
           T DPV VTIL   LGA KT L
Sbjct: 57  TLDPVPVTILTGFLGAGKTSL 77


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 294 RSCHKIVTDTGSVVRTCLDVNPADLNHTCRLMEKNSKVKY 413
           + CHK + +TG++ + C   N   L      + ++S+  Y
Sbjct: 14  QKCHKSMLNTGAIFKNCKLRNGDVLQEVTESLTEDSEFNY 53


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 509 VQICY--DEC*SSEWDRDGC 456
           V  CY   EC   E+DRDGC
Sbjct: 66  VSDCYYCSECTRMEYDRDGC 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,434
Number of Sequences: 5004
Number of extensions: 44462
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)