Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J12
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 31 0.58
07_03_1436 - 26543846-26546806 28 4.1
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 5.4
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 28 5.4
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528... 28 5.4
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200... 27 7.2
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 27 9.5
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 190 LVLLNGSPHPGSC*ELHW*QRKQVPISNT 104
LVL GS PG C EL W K VP+ T
Sbjct: 661 LVLRRGSAVPGPCKELFWKMCKHVPLRTT 689
>07_03_1436 - 26543846-26546806
Length = 986
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 399 SKVKYCSVCDKDSCNGAGTTSVSIPLATLALIIT 500
S VK CDK+SC A T +++ + L +T
Sbjct: 908 SDVKQAVTCDKESCEMAQTREITLAREEIRLAVT 941
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 87 LAFLLAVFEIGTCLRCYQCNSQQDPGCGDPFKSTKYL 197
+ F FE LR +Q N D CG F S KYL
Sbjct: 798 IEFCDMTFETKAELRAHQRNICTDESCGKRFSSHKYL 834
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 211 PKTLSITTSSTFVKS*PLKSSAPSWEPLDLVTRSSPIPDQS 333
P +S + S + P+K +P EP DL+ + P PD S
Sbjct: 307 PPPVSTSESEPEPEPEPVKEVSPVHEPTDLLGMNEPTPDVS 347
>02_01_0707 -
5276963-5278396,5280163-5280248,5280634-5281011,
5281453-5281690,5281787-5282052,5282148-5282526
Length = 926
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 490 SAKVASGIETDVVPAPLQL---SLSHTLQYLTLEFFSIKRHVWFKSAGFTSRQVRTTDPV 320
S+ ++ I V+P +++ + H L++ E F R WF+ F + + +P+
Sbjct: 384 SSSTSTNIVGGVIPRLVRMIEDTTDHVLRFDVPEMFERDRFSWFRDEEFARQVLAGVNPI 443
Query: 319 SVTIL 305
+ +L
Sbjct: 444 CIQLL 448
>08_02_0665 +
19818500-19819013,19819169-19819260,19819435-19820056,
19820575-19820775,19821327-19821395,19821428-19821522,
19821608-19822153
Length = 712
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 291 PRSCHKIVTDTGSVVRTCLDVNPADLNHTCRLMEKNS--KVKYCSVCDKDSC--NGAGTT 458
P+ C +VTD G+ + +++ D + + +S K+ ++C + +G GTT
Sbjct: 445 PKMCALLVTDRGNRLIRQINLKQEDCARETQPVNNSSFSKMSLQNMCSVPAQLQDGLGTT 504
Query: 459 SVSIPLATLALI 494
SVSI AL+
Sbjct: 505 SVSIIAVLCALL 516
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 336 RTCLDVNPADLNHTCRLMEKNSKVKYCSVCD 428
+T L+V NH CR + NS +C+ D
Sbjct: 201 KTSLEVTVTFYNHDCRFAKFNSPSSFCTSSD 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,005
Number of Sequences: 37544
Number of extensions: 299387
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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