Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J12
         (537 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127707-1|AAI27708.1|  344|Homo sapiens transmembrane protein 8...    31   3.4  
BC127706-1|AAI27707.1|  343|Homo sapiens transmembrane protein 8...    31   3.4  
AL450998-2|CAH70850.1|  343|Homo sapiens novel protein protein.        31   3.4  

>BC127707-1|AAI27708.1|  344|Homo sapiens transmembrane protein 82
           protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 285 GAPRSCHKIVTDTGSVVRTCLDVNPADLN-HTCRLMEKNSKVKYCSVC 425
           GAP     ++   G  + T L +    L+ H CRL E +S  +YC VC
Sbjct: 145 GAPHRTLNLLLSLG--LATLLGLGARRLHRHVCRLYELHSSQRYCGVC 190


>BC127706-1|AAI27707.1|  343|Homo sapiens transmembrane protein 82
           protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 285 GAPRSCHKIVTDTGSVVRTCLDVNPADLN-HTCRLMEKNSKVKYCSVC 425
           GAP     ++   G  + T L +    L+ H CRL E +S  +YC VC
Sbjct: 145 GAPHRTLNLLLSLG--LATLLGLGARRLHRHVCRLYELHSSQRYCGVC 190


>AL450998-2|CAH70850.1|  343|Homo sapiens novel protein protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 285 GAPRSCHKIVTDTGSVVRTCLDVNPADLN-HTCRLMEKNSKVKYCSVC 425
           GAP     ++   G  + T L +    L+ H CRL E +S  +YC VC
Sbjct: 145 GAPHRTLNLLLSLG--LATLLGLGARRLHRHVCRLYELHSSQRYCGVC 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,817,020
Number of Sequences: 237096
Number of extensions: 1746847
Number of successful extensions: 3947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3947
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)