Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J11
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   135   3e-33
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   135   3e-33
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    28   0.54 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   2.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   5.0  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    24   8.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   8.8  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    24   8.8  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  135 bits (326), Expect = 3e-33
 Identities = 61/112 (54%), Positives = 80/112 (71%)
 Frame = +3

Query: 27  RIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRK 206
           R GK+  P  +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG  
Sbjct: 24  RSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSV 83

Query: 207 RNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILTTQGRRDLDRIA 362
             G+ PSH    SGS+ RK +Q+LE + ++EK  +GGR ++ QG+RDLDRIA
Sbjct: 84  NRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  135 bits (326), Expect = 3e-33
 Identities = 61/112 (54%), Positives = 80/112 (71%)
 Frame = +3

Query: 27  RIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRK 206
           R GK+  P  +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG  
Sbjct: 24  RSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSV 83

Query: 207 RNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILTTQGRRDLDRIA 362
             G+ PSH    SGS+ RK +Q+LE + ++EK  +GGR ++ QG+RDLDRIA
Sbjct: 84  NRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 40  TLPILALCWQPL 5
           T PI+ALCWQPL
Sbjct: 220 TKPIMALCWQPL 231


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 180 QS*LQQESGYRCDAV*QHSVHKTNQGHR 97
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 96  EPVP*NELSLPSPYDLEPSLCRSLPCVGNP 7
           +PV  NE  LPSP DL   +   + C   P
Sbjct: 560 KPVTANESVLPSPEDLLNKILLKVKCSATP 589


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 45  PSLCRSLPCVGNPSC 1
           P++CR + C+  P+C
Sbjct: 110 PNICRVIDCIRTPAC 124


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 344 TSALGGENTAAILNLLYQLQR 282
           TS+ GG+ T ++ N+L QL++
Sbjct: 820 TSSSGGQRTTSLNNILMQLRK 840


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 52  IIWTW*RQLVSRNWL 96
           I W+W  QL++R W+
Sbjct: 177 ISWSWLLQLIARTWM 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,859
Number of Sequences: 5004
Number of extensions: 31737
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)