Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J10
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   1.6  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   3.7  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   4.9  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   6.5  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    24   8.6  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    24   8.6  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    24   8.6  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   8.6  

>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 121 HKSQDNLHGRCKHIARNDMSMREAWVRWY 207
           H    + H R    AR   S+ E W+RW+
Sbjct: 244 HPDSMDFHWRYNGTARMTTSIMEEWLRWF 272


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 179 LISFRAMCLHRPCK 138
           L SFR +C H PCK
Sbjct: 143 LESFRCLCCHVPCK 156


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 278 TCKCKWSSGKKTCHVCLR 331
           +C C+W     TC +C R
Sbjct: 45  SCICRWMDQSLTCPICKR 62


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 360 RRGSTAGAGHRRHTWHVFFPEDH 292
           +R  TAG G     W + FP+D+
Sbjct: 228 KRCLTAGTGSDVKVWEISFPDDN 250


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 333 HRRHTWHVFFPEDHLH 286
           H    WHV + +DH H
Sbjct: 562 HDEALWHVAYEQDHAH 577


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 269 GSNRASRLPSLLRMW 225
           GSN+AS+ P  L MW
Sbjct: 18  GSNKASKFPLPLAMW 32


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 142 VSYPEICETTIKTTKNHHINHITSHRNSFIGESAIRCW 29
           VS+ E    T    K+ ++  ++SH + F+ +++ +CW
Sbjct: 182 VSFKESSINTNTVFKDVYVE-VSSHNDEFLLKNSSKCW 218


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 112  LLFHKSQDNLHGRCKHIA 165
            LLF+KS DNL   C  I+
Sbjct: 2996 LLFNKSPDNLSAACNAIS 3013


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 288 HLQVAIWEQSSQSLAVLAAHVVSITSQIPPDPRL 187
           HL++     +   LA+   +++ I  Q PPD RL
Sbjct: 370 HLRIFCERLTKSQLAMFLPNLLEIWVQQPPDKRL 403


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 263 CSHIATCKCKWSSGKKTCHVC 325
           C H   C C    G  +C VC
Sbjct: 227 CQHTFHCPCLQKWGNSSCPVC 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,446
Number of Sequences: 5004
Number of extensions: 33492
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)