Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J10
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1165 - 24459156-24460139 31 0.28
01_05_0160 + 18751512-18751960,18752082-18752553 30 0.65
04_04_1257 - 32155935-32156526,32156655-32157067 29 1.5
11_01_0624 - 5021105-5022061 28 2.0
03_01_0524 + 3943581-3943610,3943889-3944050,3944403-3944637,394... 28 2.0
11_01_0167 - 1360166-1360369,1360747-1360823,1360911-1361534,136... 27 3.5
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 27 3.5
03_03_0218 + 15506438-15506533,15508340-15508405,15508515-155104... 27 3.5
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 27 3.5
11_06_0007 - 19171122-19172036 27 4.6
06_03_0340 + 19703574-19704329 27 4.6
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 27 6.1
11_04_0153 + 14159820-14162417 27 6.1
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 27 6.1
08_02_1019 - 23657175-23658047 27 6.1
07_01_0422 + 3220988-3221536 27 6.1
05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464... 27 6.1
02_05_0934 - 32851709-32853398,32854458-32854738 27 6.1
09_04_0311 + 16585406-16585521,16585713-16586175 26 8.1
06_01_0319 - 2292071-2292208,2292342-2292418,2292758-2293321,229... 26 8.1
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 26 8.1
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 26 8.1
>07_03_1165 - 24459156-24460139
Length = 327
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 322 HVACFLPRGPFALASGDMGAIEPVACRPCCACGE 221
HVA + R A ASG GA +P PC CG+
Sbjct: 192 HVAGHINRDKMATASGSGGAGKPKGKHPCNVCGK 225
>01_05_0160 + 18751512-18751960,18752082-18752553
Length = 306
Score = 29.9 bits (64), Expect = 0.65
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 231 AQQGRQATGSIAPISPLASANGPLGRKH 314
AQQG TG A +P A+A GP G KH
Sbjct: 217 AQQGAPITGHQATGNPAAAALGPPGMKH 244
>04_04_1257 - 32155935-32156526,32156655-32157067
Length = 334
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = -2
Query: 277 GDMGAIEPVACRPCCACGEYHKPNTT*PTPHACSYHFGLCVYIGHVSYPEICETTIKTTK 98
G++G I + C C E H P PT + LC HV P+ C+ ++ TK
Sbjct: 174 GEIGHIASMCLTLCAYCEEDHPPGEC-PTRKVTCF---LCEGTNHV--PKDCQLSVLLTK 227
Query: 97 NHHINHIT 74
I T
Sbjct: 228 TAEIQRTT 235
>11_01_0624 - 5021105-5022061
Length = 318
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 312 VFFPEDHLHLQVAIWEQSSQSLAVLAAHVVSITSQIP-PDPRLTHAHI 172
+ P +HLHL AIW + + VL + + ++ PD L H+
Sbjct: 125 LLLPSNHLHLSRAIWRAARHEVRVLRFRLFTSEQRLRLPDLPLVSHHL 172
>03_01_0524 +
3943581-3943610,3943889-3944050,3944403-3944637,
3945626-3945666,3946101-3946145,3947119-3947246,
3947446-3947554,3947641-3947694
Length = 267
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 257 LDCSHI--ATCKCKWSSGKKTCHVCLR*PAPAVEP 355
L C H+ A+C +W S K C VC P EP
Sbjct: 231 LPCKHVYHASCVTRWLSINKVCPVCFA-EVPGDEP 264
>11_01_0167 -
1360166-1360369,1360747-1360823,1360911-1361534,
1361621-1361825
Length = 369
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 264 APISPLASANGPLGRKHATCASGDLRRPSNLS 359
AP SPLA+A LG A+CA+ L P NLS
Sbjct: 18 APASPLATALFVLGDSTASCAATTL--PLNLS 47
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +2
Query: 257 LDCSHIATCKC--KWSSGKKTCHVC 325
L C H C C KW K TC VC
Sbjct: 509 LKCGHGFHCNCIKKWLQVKNTCPVC 533
>03_03_0218 +
15506438-15506533,15508340-15508405,15508515-15510417,
15510857-15511347
Length = 851
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 231 AQQGRQATGSIAPISPLASANGPLGRKHATCASGDLRRPSNLSS 362
A R A G + LA + LGR A A+G+L RPS+L+S
Sbjct: 725 ASVNRPARGQVHGFR-LALWHEHLGRAAAASAAGELLRPSSLAS 767
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 211 PNTT*PTPHACSYHFGLCVYIGHVSYPEICET-TIKTTKNHHINH 80
P + H C Y+ L ++ YP++ T T++ + H NH
Sbjct: 194 PEVSVTAVHICQYNSFLSIFANPEIYPQLYSTVTLRHGEKKHYNH 238
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.1 bits (57), Expect = 4.6
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = -2
Query: 361 EERFDGRRRSPEAHVACFLPRGPFALASGDMGAIEPVACR----PCCA----CGEYHKPN 206
EER R+ + E+ C L R A+A+G ++ + R P CA CGE PN
Sbjct: 162 EERL--RQAAAESQAWCGLARSNEAVAAGLRATLDHLLLRAAAAPPCAPVEGCGESDGPN 219
Query: 205 TT*PTPHACSY 173
T +C +
Sbjct: 220 TADDDAQSCCF 230
>06_03_0340 + 19703574-19704329
Length = 251
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +2
Query: 236 ARTASDWLDCSHIATCKC--KWSSGKKTCHVCLR*PAPAVEPL 358
A+ D C H KC KW + TC VC P PL
Sbjct: 195 AQALRDLPRCGHRFHAKCIGKWLTAHPTCPVCRTTAVPPPAPL 237
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 239 RTASDWLDCSHI--ATCKCKWSSGKKTCHVC 325
R + L C H+ ++C W S + TC VC
Sbjct: 344 RARAKQLPCMHLYHSSCILPWLSSRNTCPVC 374
>11_04_0153 + 14159820-14162417
Length = 865
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 220 THHMRSKDGKRLARLLPYRH 279
+HH+ +DG A +LP+RH
Sbjct: 622 SHHLLRRDGAGAAAVLPWRH 641
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 239 RTASDWLDCSHI--ATCKCKWSSGKKTCHVC 325
R + L C H+ ++C W S + TC VC
Sbjct: 886 RARAKQLPCMHLYHSSCILPWFSSRNTCPVC 916
>08_02_1019 - 23657175-23658047
Length = 290
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 286 LASGDMGAIEPVACRPCCACGEYHKPNTT*PT 191
+ASG+ G+I+ + C C +H+ + PT
Sbjct: 86 MASGEEGSIDALRCAACGCHRNFHRKESESPT 117
>07_01_0422 + 3220988-3221536
Length = 182
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +2
Query: 260 DCSHIATCKC--KWSSGKKTCHVCLR*PAPAVEP 355
DC H+ +C W + TC VC P P+ P
Sbjct: 134 DCGHLFHRECVDPWLRQRPTCPVCRTSPLPSPMP 167
>05_07_0182 +
28243881-28245406,28245460-28245505,28246309-28246400,
28246513-28246635,28246753-28246984
Length = 672
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 288 HLQVAIWEQSSQSLAVLAAHVVSITSQIPPDPRLTHAHIISG 163
H +A+ ++S+ ++ L VVS T I +L HA + G
Sbjct: 621 HANLALPQRSNSAILQLTTRVVSATRGIMLGRKLIHAELFDG 662
>02_05_0934 - 32851709-32853398,32854458-32854738
Length = 656
Score = 26.6 bits (56), Expect = 6.1
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 219 YSPH-AQQGRQATGSIAPISPLASANGPLGRKHATCASGDLRRPSNLSSD 365
Y H A +A I PIS L G K A GD+RR N D
Sbjct: 196 YKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGD 245
>09_04_0311 + 16585406-16585521,16585713-16586175
Length = 192
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 257 LDCSHI--ATCKCKWSSGKKTCHVCLR 331
L C H+ A C +W S + +C VC R
Sbjct: 83 LPCGHLYHADCFVQWLSRRNSCPVCRR 109
>06_01_0319 -
2292071-2292208,2292342-2292418,2292758-2293321,
2293978-2294104,2294207-2294323,2294440-2294547,
2296567-2296804,2296915-2297122,2297199-2297247,
2297384-2297728
Length = 656
Score = 26.2 bits (55), Expect = 8.1
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = -3
Query: 363 PRRGSTAGAGHRRHTWHVFFPEDHLHLQVAIWEQSSQSLAVLA 235
P R STA A +R VFFP+D LH QSS VLA
Sbjct: 55 PERRSTAKALRQRLA-EVFFPDDPLH---QFKNQSSARRLVLA 93
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 223 HHMRSKDGKRLARLLPYRHLQVQMVLW-EENMPRV 324
++++SK+ ARL+ ++LQ ++LW ++ +PRV
Sbjct: 708 YNVKSKEEAVEARLIDKQYLQALVLLWRDQPVPRV 742
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 100 LWF*LLFHKSQDNLHGRCKHIARNDMSMREAWVRWYLACDTHHMRSKDGKRLARLL 267
LW LLFHKSQ + N++ + V Y CDT + + +R++ ++
Sbjct: 1610 LW--LLFHKSQLGANNDKDDTVLNEVIISPKEVLDYTRCDTWSVSIRGHERISEVI 1663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,335
Number of Sequences: 37544
Number of extensions: 273427
Number of successful extensions: 832
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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