Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J10
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   0.50 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 340 RRSPEAHVACFLPRGPFALASGDMGAI 260
           RR    HV+C    G   +  GD+G+I
Sbjct: 112 RRDRGLHVSCSFSAGSTIIREGDVGSI 138


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 97  NHHINHITSHRNSFIGESAIRC 32
           NHH++H   H  + +G S   C
Sbjct: 278 NHHVHHANHH--AILGHSGFLC 297


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 296 TICTCKWRYGSNRASRLPSLLR 231
           T+    W +   R  R+P L+R
Sbjct: 314 TVIIINWNFRGPRTHRMPQLIR 335


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 SMREAWVRWYLACDTHHMRS 237
           S R A  R+Y A   HH+RS
Sbjct: 426 SQRFASGRYYSAYSLHHVRS 445


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 100 KNHHINHITSHRN 62
           KN + NH TSH++
Sbjct: 116 KNQNNNHYTSHQH 128


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 295 PFALASGDMGAIEPVACRPCCA 230
           P ++ SGD   +  V  +P CA
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCA 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,994
Number of Sequences: 438
Number of extensions: 2302
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)