Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J09
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.39 
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    26   3.6  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   6.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.4  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 451 NTISSPGLGSSRSLMSKIINHLVNKAFADKGLSNAAGAGKRTMVIRLPS 305
           +T++   LG+S      + NHL +    D GL ++ G       +R P+
Sbjct: 442 STLNPSSLGASNLSQPSLANHLSSSGLFDNGLFSSGGLSSNFSSLRRPA 490


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 351 MLQELVNALWSYVCHQHFEPEAELCTRL 268
           + Q+LVN +W   C  ++EP  E+  RL
Sbjct: 90  LAQDLVN-VWKAACEDNYEPIREIHERL 116


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 150 LRHRLQGTVQECSARPV 100
           +RHRL+  ++ C+ARPV
Sbjct: 66  VRHRLEYHLKRCNARPV 82


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 84  LIREPTPDELSILELFPVTCDGDE 155
           L+R P+P  LS  EL  ++ D DE
Sbjct: 324 LVRTPSPASLSSSELINISRDWDE 347


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 281  YVRVLTTGKYLFVIWIPFVPQLSETARATGF 189
            Y  + T G +L  +WI F+P  +  A A GF
Sbjct: 1114 YTVIATLGSFL--LWIVFMPIYAVAAPAIGF 1142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,686
Number of Sequences: 5004
Number of extensions: 39454
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)