Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J09
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL021492-5|CAA16385.2|  157|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z66515-1|CAA91347.1|  218|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   10.0 
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical protein
            T21C9.6 protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -3

Query: 257  KYLFVIWIPFVPQLSETARATGFIISPGSL-----GSLYLISVTGYREQFKNAQLV 105
            KY  + W PF P +S      G ++S G++     G   LI+V+     FK   LV
Sbjct: 1143 KYTDICWSPFFPIISGIVTEIGGLLSHGAVVAREYGLPSLIAVSNATYHFKTGDLV 1198


>AL021492-5|CAA16385.2|  157|Caenorhabditis elegans Hypothetical
           protein Y45F10D.10 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 466 SLTSINTISSPGLGSSRSLMSKIINHLVNKAFADK 362
           ++  IN++   G   SRSL  KI+ HL N     K
Sbjct: 12  AVQEINSLIQNGTSCSRSLEEKIVEHLENSQLLGK 46


>Z66515-1|CAA91347.1|  218|Caenorhabditis elegans Hypothetical
           protein R53.2 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 27  SGIRMSPAASFAERWARDNLIREPTPDELSILELFP 134
           SG+  S A    E+W R + +  P PD +   ++ P
Sbjct: 112 SGVAYSLAKGLPEQWVRSSDVGLPKPDAVLFFDVSP 147


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 311  QTYDHSAFTSSCSIGQTFISKSFINEMVN 397
            Q YD  A+ +S S+G   +S +F   ++N
Sbjct: 1000 QVYDSPAYATSMSLGMQLLSATFSANVIN 1028


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 311  QTYDHSAFTSSCSIGQTFISKSFINEMVN 397
            Q YD  A+ +S S+G   +S +F   ++N
Sbjct: 1000 QVYDSPAYATSMSLGMQLLSATFSANVIN 1028


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,300,642
Number of Sequences: 27780
Number of extensions: 232343
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)