Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J07
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   140   1e-34
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   140   1e-34
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    38   9e-04
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   2.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   2.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   2.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   3.9  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   5.1  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    24   8.9  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    24   8.9  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    24   8.9  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  140 bits (338), Expect = 1e-34
 Identities = 67/96 (69%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
 Frame = +3

Query: 153 IQLQEPIL-C*QEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEI 329
           +++ EPIL    +KF+GVDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+
Sbjct: 43  MKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAEL 102

Query: 330 KDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 437
           K  L+ YDR+LLVADPRR EPKKFGG GARAR QKS
Sbjct: 103 KKALITYDRTLLVADPRRMEPKKFGGHGARARQQKS 138


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  140 bits (338), Expect = 1e-34
 Identities = 67/96 (69%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
 Frame = +3

Query: 153 IQLQEPIL-C*QEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEI 329
           +++ EPIL    +KF+GVDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+
Sbjct: 43  MKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAEL 102

Query: 330 KDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 437
           K  L+ YDR+LLVADPRR EPKKFGG GARAR QKS
Sbjct: 103 KKALITYDRTLLVADPRRMEPKKFGGHGARARQQKS 138


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 28/80 (35%), Positives = 40/80 (50%)
 Frame = +3

Query: 189 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 368
           + +  ++  TV GGG   Q  A+  AISK+LI      + E S K+     V  D   ++
Sbjct: 59  RLTNYNVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVL 107

Query: 369 ADPRRCEPKKFGGPGARARY 428
            D R+ E KK G P AR +Y
Sbjct: 108 NDKRKVERKKTGQPKARKKY 127


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 272 RDGLSDCINLCNMSTTFYSHSNIHTRELFLLAKDRFL 162
           RD   +CI +CNM    +    IHT +  ++A  + L
Sbjct: 685 RDAFDNCITVCNMEN--FDPLGIHTGDSIVVAPSQTL 719


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 272 RDGLSDCINLCNMSTTFYSHSNIHTRELFLLAKDRFL 162
           RD  ++CI +CNM    +    IHT +  ++A  + L
Sbjct: 299 RDAANNCITVCNMEN--FDPLGIHTGDSIVVAPSQTL 333


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 245 LCNMSTTFYSHSNIHTRELFLLAKDRFL 162
           LC      YS   +H +E+F L ++RFL
Sbjct: 150 LCAFYEILYSPRILHNKEIFPLFRNRFL 177


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 247 TCATCPPPFTVTLISTP 197
           T  +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 134 PVRGRPFTPHSSLVAYATAVQ 72
           P R   ++P+  L AYATA Q
Sbjct: 36  PARNACYSPNGKLFAYATATQ 56


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 317 RCFVYIFLVESDKGFRDGLSDCINLCNMSTTFYSHSNIH 201
           +C V +  V+ +KG R  LS  I   N+ +T     N H
Sbjct: 318 KCLVSLLFVDGEKGLRSELSQ-IPTENIDSTTDRFDNYH 355


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = -3

Query: 158 LYEEVWVLPVRGRPFTPHSSLVA----------YATAVQFSYGRK--LVRLGLVHVLPPA 15
           LY  V    VRG  F P+ S+VA          +A+ V+F Y  K  L R G++  L  A
Sbjct: 198 LYMPVERATVRGVSFLPNQSIVAAYNYIKDSKRFASLVRFDYSSKNQLWRFGMIRDLKNA 257

Query: 14  R 12
           +
Sbjct: 258 K 258


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 293 VESDKGFRDGLSDCINLCNMSTTF 222
           + +D  F   +S  + +CN+STTF
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,885
Number of Sequences: 5004
Number of extensions: 40206
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)