Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_J07
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 143 6e-35
11_01_0155 - 1287003-1287452 143 6e-35
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 32 0.23
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 30 0.93
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 30 0.93
11_01_0523 - 4109070-4109984,4110532-4110936 28 3.8
03_05_0077 - 20547070-20547108,20547407-20547697 27 5.0
09_03_0123 - 12512116-12512442,12512742-12512846,12512928-125130... 27 6.6
03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281 27 8.7
>12_01_0152 - 1168928-1169377
Length = 149
Score = 143 bits (346), Expect = 6e-35
Identities = 65/92 (70%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Frame = +3
Query: 165 EPIL-C*QEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 341
EPIL + +F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI
Sbjct: 56 EPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIF 115
Query: 342 VQYDRSLLVADPRRCEPKKFGGPGARARYQKS 437
+YDR+LLVADPRRCEPKKFGG GARAR+QKS
Sbjct: 116 ARYDRTLLVADPRRCEPKKFGGRGARARFQKS 147
>11_01_0155 - 1287003-1287452
Length = 149
Score = 143 bits (346), Expect = 6e-35
Identities = 65/92 (70%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Frame = +3
Query: 165 EPIL-C*QEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 341
EPIL + +F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI
Sbjct: 56 EPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIF 115
Query: 342 VQYDRSLLVADPRRCEPKKFGGPGARARYQKS 437
+YDR+LLVADPRRCEPKKFGG GARAR+QKS
Sbjct: 116 ARYDRTLLVADPRRCEPKKFGGRGARARFQKS 147
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 204 DIRVTVKGGGHVAQVYAIRQAISKAL 281
D+ TVKGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.9 bits (64), Expect = 0.93
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 239 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 418
CTG+ Q S S Y F +I + + G+ + S K R +++R ++ + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784
Query: 419 CQIP 430
++P
Sbjct: 785 VRLP 788
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 29.9 bits (64), Expect = 0.93
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -3
Query: 266 GLSDCINLCNMSTTFYSHSNIHTRELFLLAKDRFL*LYEEVWVLPVRGRPFTPHSSLVAY 87
G D N C M S+ H + + A D+ Y+E+W + ++G F H V
Sbjct: 215 GEHDYRNFCKMDAANVSNYRRHITDFNISAYDQRS-NYDELWAITIKGSAFLWHQ--VRC 271
Query: 86 ATAVQFSYGRKL 51
AV F G+ L
Sbjct: 272 MVAVLFLIGQGL 283
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 225 GGGHVAQVYAIRQAISKALIAFY 293
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>03_05_0077 - 20547070-20547108,20547407-20547697
Length = 109
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 323 GDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQ 424
GDQR S + +GR L E W+RR C+
Sbjct: 4 GDQRGDSPSSHELSGRLEGILADGEAPWARRACK 37
>09_03_0123 -
12512116-12512442,12512742-12512846,12512928-12513091,
12513282-12513480,12514368-12514585,12514674-12514743
Length = 360
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 135 TSEGASIYTTLQSRCVCYRSA 73
T E S++ L +RCVC+ SA
Sbjct: 318 TPESVSMFAGLAARCVCFESA 338
>03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281
Length = 314
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 73 CTAVAYATRLECGVNGRPLTGRTQTSSYNYRNLSFAS 183
C A ++ L+ RP +YNY+N+ FA+
Sbjct: 93 CAARSFLKALDARFANRPAVASAVDITYNYQNMVFAN 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,659
Number of Sequences: 37544
Number of extensions: 295994
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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