Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J07
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   144   2e-35
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.37 
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    30   0.64 
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  144 bits (349), Expect = 2e-35
 Identities = 67/96 (69%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
 Frame = +3

Query: 153 IQLQEPILC*-QEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEI 329
           I+LQEP+L   +E+F  VDIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+
Sbjct: 47  IKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKREL 106

Query: 330 KDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 437
           K+I   YD+SLLVADPRR E KKFGGPGARARYQKS
Sbjct: 107 KNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKS 142



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 38  IQAVQVFGRKKTALR-*HTQRDWSVV*MDAPSL--VEPRLLHTTTGTYPLLAGK 190
           +Q+VQ FGRKKTA    H ++   ++ ++   L  +EP++L        LL GK
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGK 58


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 300 YVDEASKKEIKDILVQYDRSLLVADPRRCE 389
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 192 FSGVDIRVTVKG---GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 362
           F G + R T+ G   GG VA + +    ++  L + +Q+Y+  +S      + +Q +R+ 
Sbjct: 114 FGGNNKRTTLLGHSYGGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTY 172

Query: 363 LVADPRRCEPK 395
             A+   C PK
Sbjct: 173 RFAEHANCLPK 183


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 LLVADPRRCEPKKFGGPGARARY 428
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 351 RIELECL*SPS*MLRLHISGRKR 283
           R  L+C  +PS +LRLHISG  R
Sbjct: 139 RFALKCF-NPSKLLRLHISGSNR 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,357
Number of Sequences: 27780
Number of extensions: 239261
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)