Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J05
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   194   7e-51
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   191   5e-50
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.45 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   3.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.2  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   4.2  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   5.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.6  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  194 bits (473), Expect = 7e-51
 Identities = 89/155 (57%), Positives = 119/155 (76%)
 Frame = +1

Query: 67  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 246
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 247 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 426
           E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137

Query: 427 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEII 531
           F IGFT++     +KT YAQ +Q+RAI +KM ++I
Sbjct: 138 FVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  191 bits (466), Expect = 5e-50
 Identities = 88/155 (56%), Positives = 119/155 (76%)
 Frame = +1

Query: 67  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 246
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 247 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 426
           E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RV
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137

Query: 427 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEII 531
           F IGFT +     +KT YAQ +Q+RAIR+KM ++I
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 202 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 375
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 376 IEANIDVKTT 405
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 37  SKGLYFYRPPLV 2
           S+GLYFY PP++
Sbjct: 137 SRGLYFYHPPII 148


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 427 FCIGFTNKDTLSQRKTCY 480
           FC G  NKDT+   K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 304  LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 477
            L + + +  +T  +++++       + N + K    YV ++   G  NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 78  RINNLLLNTLLASFRKAFIFTDRPSC 1
           +I  LLL  L+  FRK+F   D+  C
Sbjct: 189 QIGELLLTRLIVQFRKSFQRNDKSMC 214


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 325 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 423
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 346 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 483
           ++    W  L+       T  GYV+R    GFT+   + + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 147 PCQSHPGNKNCI*GSKGACF 206
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 413 MSYVFSASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSRA 538
           +S + SA  SPT+  +  +   + SIPK+ +  +   ++S A
Sbjct: 396 LSLIPSAVSSPTKANTNKSHQRSFSIPKATKDSQTPSENSAA 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,068
Number of Sequences: 5004
Number of extensions: 45082
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)