Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J04
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    25   1.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   2.4  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    23   4.2  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    23   7.3  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    23   7.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   7.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    22   9.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    22   9.6  

>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 154 GCGVLLFNCCVCHYYY*VSKRKLEIKN*NYST 59
           G  VL  N  +C  YY V +   E+ N +Y T
Sbjct: 82  GIDVLWLNSGICQSYYTVMEAPEEVWNAHYQT 113


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 190  RRFIDFHGSHLFGCGVLLFNCCVCHYYY 107
            R+ ID     L  CG +LFN    +YYY
Sbjct: 952  RKRIDAISVILSECGFVLFNFSQPYYYY 979


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 98  KEKIRNKELKLQHVLRTTQNNVH 30
           KEK   KE+ LQ++L T  +  H
Sbjct: 46  KEKTAKKEIDLQYILTTHHHYDH 68


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 115 YYY*VSKRKLEIKN*NYSTCYAQRKTMFTST 23
           YYY     ++E  N  YS+ Y +   M TS+
Sbjct: 31  YYYCNQASEVEFTNVGYSSTYNEITNMDTSS 61


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 184 FIDFHGSHLFGCGVLLFNCC 125
           F+ FH + ++G G L+   C
Sbjct: 285 FVQFHPTGIYGAGCLITEGC 304


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 192  LGDSLTSMEVTSSGAAS 142
            L DS+T ME TSS  AS
Sbjct: 1221 LNDSITDMENTSSFTAS 1237


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 183 SLTSMEVTSSGAASCFSTAAS 121
           SLTS   TSS  AS  +T++S
Sbjct: 108 SLTSSSATSSSLASSSTTSSS 128


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 101  NSIIIMADAAVEKQDAAPEEVTSMEVN--ESPNYEIS 205
            NS+II A   +EK+ +  ++  S   N  E  N +IS
Sbjct: 1004 NSVIIKASVILEKEISEKQDEASQTTNVAELVNQKIS 1040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,120
Number of Sequences: 5004
Number of extensions: 10458
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)