Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J04
         (210 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    27   2.7  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    25   6.3  
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250...    25   8.4  

>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 EEVTSMEVNESPNYEISH 208
           E VTSM+VN  PN + SH
Sbjct: 866 ESVTSMDVNNRPNKQRSH 883


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 34  TLFCVVRNTCCNFNSL 81
           ++FCV  N CCNF ++
Sbjct: 186 SIFCVDPNGCCNFTTV 201


>02_01_0348 -
           2506007-2506909,2507003-2508120,2508230-2508883,
           2508920-2509046
          Length = 933

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 147 PHPKR*LPWKSMNLLIMK 200
           PHPKR  PW +M+ +  K
Sbjct: 138 PHPKRGSPWPAMSAIRAK 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,994,312
Number of Sequences: 37544
Number of extensions: 64039
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)