Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J04
         (210 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    26   4.2  
AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical ...    25   7.3  

>Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical
           protein K01G5.10 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 178 DFHGSHLFGCGVLLFNCCVCH 116
           DFHG+  FGC  LLF+    H
Sbjct: 211 DFHGAKNFGCRALLFDSSSSH 231


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 34   TLFCVVRNTCCNFNSLF 84
            T+FC++ + CC F++ F
Sbjct: 1043 TIFCLICSACCRFSNSF 1059


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 34  TLFCVVRNTCCNFNSLF 84
           T+FC++ + CC F++ F
Sbjct: 652 TIFCLICSACCRFSNSF 668


>AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical
           protein Y87G2A.7 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 196 IIRRFIDFHGSHLFGCGVL 140
           +I RFI  HG H F  G L
Sbjct: 182 LISRFIQMHGEHSFRAGSL 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,437,058
Number of Sequences: 27780
Number of extensions: 63143
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)