Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_J04
         (210 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   4.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   6.4  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              19   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 189 GDSLTSMEVTSSGAASCFSTAASAIIIIE 103
           G S  + E TS+  A  F+TAAS+  ++E
Sbjct: 894 GCSSKNGEPTSAAFAQGFATAASSPGLLE 922


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 35  HCFALC 52
           HCFALC
Sbjct: 742 HCFALC 747


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 123 TQQLKSKTPHPKR*LPWKS 179
           T  L+++T HP   L W S
Sbjct: 457 TTTLQTRTMHPYDHLVWNS 475


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 92  KIRNKELKLQHVLRTT 45
           K++NK+   +H+L+ T
Sbjct: 328 KVKNKKAGSKHLLQNT 343


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +2

Query: 2   GCMNSHDGTGEHCFALCVTRAV 67
           G +++ DG  +HC    V + +
Sbjct: 191 GSISNIDGAEDHCNKTAVRKVI 212


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 145 VLLFNCCVC 119
           VL+F  CVC
Sbjct: 5   VLIFGFCVC 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,833
Number of Sequences: 438
Number of extensions: 685
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)