Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I24
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 55 1e-08
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 29 0.78
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.0
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 28 1.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.4
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 2.4
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 2.4
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 4.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 5.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 5.5
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 5.5
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 5.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 5.5
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 7.3
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 9.7
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 9.7
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 54.8 bits (126), Expect = 1e-08
Identities = 55/210 (26%), Positives = 85/210 (40%)
Frame = +2
Query: 26 HPNFRLFLTTEISPKLPVNLLRAGRVLVFEPPPGIRANLLRTFVTVHAARMMKPPSERAR 205
H N R+ +EI +LP LL R +VF + NLL + + P R R
Sbjct: 3984 HKNSRIVCLSEIHNQLPHQLLCISRSIVFNKQTSFKNNLLN-LLELLPTMTHTLPHNRFR 4042
Query: 206 LYFLLAWFHGIVQERLRYVPLGWAKYYEFNESDLRVACDTLDTWIDATAMGRTNLPPEKV 385
L+F L+W H + E + W + F++SD T I + R N+ E+
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEPCYFDDSDF-----YFGTKILCNILYR-NVHLEEF 4096
Query: 386 PWEALVTLLSQCIYGGKIDNLFDQRLLHSFLCKLFTPKSFEADFALVANVDGASGNQRHI 565
W LL +YG K+ D L L +L F+ + +N+ + N + I
Sbjct: 4097 SWGTFKDLLLNVVYGPKVSASSDFIALDKILKRLIA--QFKTQIS--SNI-LLTDNFKFI 4151
Query: 566 TMPDGNRRDHFPQWIEELSDRQTPSWLGLP 655
+P + I +L D P WL +P
Sbjct: 4152 -LPYEITFSSAKEVIGQLPDEIPPGWLDIP 4180
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 28.7 bits (61), Expect = 0.78
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -2
Query: 586 PVPVRHCYMTLITRCPIDIGDECEISFERLRSEEFAKEGMQETLVEEVVDLPAVDTLR 413
PVP+ YM I CP+++ + SFE K G E L++++ D P+V +++
Sbjct: 398 PVPLDDSYMDFIFPCPLNVE---KGSFEDTLKSSLTK-GNSEVLLDDLSD-PSVSSIK 450
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 528 ATSAKSASNDFGVKSLQRKECRRRWSKRLSIFPP*IHCDRSVTNASHGTFSGG 370
++S+KS+S + R + S R ++FP ++TNA++GT+ G
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITNATNGTYCNG 215
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 320 DTLDTWIDATAMGRTNLPPEKVPWEALVTLLSQC 421
D L WID N P + LVTLL +C
Sbjct: 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERC 103
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 3 LQEFGTRRIPTSGCSSRQRSARSCLSICCELDVYWSS 113
L+++ + TS S Q+ SCL ICC +WS+
Sbjct: 250 LKDYLLNLVKTSESLSSQQM--SCLRICCNSSSFWSA 284
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 634 CLSV*QLFDPLREVVAPVPVRHCYMTLITRCPID 533
C +V FDP ++ P+PV+ + +T P D
Sbjct: 476 CNTVSITFDPFMDLTLPLPVKQVWSHTVTFIPAD 509
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 236 IVQERLRYVPLGWAKYYEFNESDLRVACDTLD 331
++Q +LRY P+ K Y+F+ +A D LD
Sbjct: 139 VLQYKLRYFPVFDLKIYDFHSGTGIIALDILD 170
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 488 FTPKSFEADFALVANVDGAS-GNQRHITMPDGNRRDHFPQWIEEL-SDRQTPSWLGLPN 658
+ PK + +FALV + + +I + NR FP+W E+L TP PN
Sbjct: 601 YRPKQLKFNFALVLSPEANKYWLDLNILVSLLNRAKEFPKWFEDLFLGFGTPDICAFPN 659
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 5.5
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -2
Query: 238 DTVEPSKQEV*SGAFRRRFHHASCMDSNKCPE*ISPYSRRRFEDQYTSSSQQIDRQLRAD 59
DT+ PS G FH SC+ C I + + Y S+Q
Sbjct: 202 DTINPSTSIWSCGTCYHVFH-LSCI-RKWCKNSIEQRNEDAWRCPYCQSNQTETSLHYLC 259
Query: 58 LC-REEQPEVGMRLVPNSC 5
C ++E+PE LVP+SC
Sbjct: 260 WCGKQEKPEFVKNLVPHSC 278
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 565 YMTLITRCPIDIGDECEISFERLRSEEFAKEGMQETLVEEVVDL 434
+ LI I+ G CE+SF R ++EG+ L+E VV L
Sbjct: 1173 FTLLIKLVFINWGRFCEVSFSERRLANISQEGL-TLLIESVVFL 1215
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 526 DECEISFERLRSEEFAKEGMQETLVEEVVDLP 431
D + SFER RSE A G +E +D P
Sbjct: 209 DTLKESFERARSEALASFGDGTVFIERFLDKP 240
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = -2
Query: 478 KEGMQETLVEEVVDLPAVDTLRQERHQRFPRYLLGREVSTTHCRGIDPRVECVAGDAQVR 299
K+ M+ + E+ + P + L++ R P++L S R ++ +EC + +
Sbjct: 322 KKNMKGNITEKY-NSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLY 380
Query: 298 LVELVVLSPAEWHVTQTFLHD 236
L L++ P + V + D
Sbjct: 381 LYYLIMRYPGKTMVFANGIED 401
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 492 LRSRSKLISHSSPMSMGHLVINVI*QCRTGTGATTSLNGSKSCQTDKHLPGSDY 653
LRS+ + S SSP S G N I + G S +GS + +LP Y
Sbjct: 494 LRSKKREKSSSSPYSRGPYKYNRIENLQMVVGVRASASGSFFAIRNDYLPPPIY 547
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 650 IRARKVFVGLTTLRSIEGSGRAGSR 576
I +K++V TTLR +E S AG+R
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNR 476
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 35 FRLFLTTEISPKLPVNLLRAGRVLVFEP 118
F +FL T L VNL A RV++F+P
Sbjct: 694 FDVFLLTTRVGGLGVNLTGADRVILFDP 721
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 218 LAWFHGIVQERLRYVPLGWAKYYEFN 295
LAWF GI+ L + +GW +N
Sbjct: 776 LAWFFGILGVLLGSIAIGWIITMRYN 801
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,493
Number of Sequences: 5004
Number of extensions: 58181
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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