Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I24
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361... 31 0.81
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 29 3.3
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 29 3.3
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 29 3.3
11_06_0065 - 19736265-19737302 29 4.3
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 29 4.3
03_01_0037 - 335646-335855,336480-336686,336962-337129,337377-33... 29 4.3
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 28 5.7
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 28 5.7
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 28 7.6
07_01_0578 + 4295386-4296489,4297394-4297507 28 7.6
04_03_0249 + 13462985-13463170,13463190-13463297 28 7.6
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 7.6
>03_01_0469 -
3613062-3613745,3613952-3614512,3614600-3614690,
3614782-3614870,3614962-3615027,3615309-3615423,
3615521-3615966
Length = 683
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -2
Query: 451 EEVVDLPAVDTLRQ-ERHQRFPRYLLGREVSTTHCRGIDPRVECVAG---DAQVRLVELV 284
EE V +P LR+ Y LG+++S G PR+ CV + Q R++E +
Sbjct: 575 EEAVVVPQEKILRRLNSRMTMNSYQLGKQLSLRWTTGAGPRIGCVRDYPPELQFRVMEQI 634
Query: 283 VLSP 272
L+P
Sbjct: 635 SLTP 638
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -2
Query: 484 FAKEGMQETLVEEVVDLPAVDTLRQERHQRFPR-YLLGREVSTTHCRGIDPRVECV 320
FA+EG +E +E+V++P + + ++ + Y LG+++S G PR+ CV
Sbjct: 527 FAEEGNEE---DELVEVPEEMIMNRINCKKATKSYQLGKQLSFQWSTGAGPRIGCV 579
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 385 YLLGREVSTTHCRGIDPRVECV---AGDAQVRLVELVVLSP 272
Y LG+++S G PR+ CV + Q+R +E V LSP
Sbjct: 495 YQLGKQLSFKWTTGAGPRIVCVRDYPSELQLRALEQVHLSP 535
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 385 YLLGREVSTTHCRGIDPRVECV---AGDAQVRLVELVVLSP 272
Y LG+++S G PR+ CV + Q+R +E V LSP
Sbjct: 487 YQLGKQLSFRWTTGAGPRIGCVRDYPSELQLRALEQVNLSP 527
>11_06_0065 - 19736265-19737302
Length = 345
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 180 IMRAAWTVTNVLSKLARIPGGGSKTSTRPARNRLTGNFGLISVVRNS-LKLGCASCRIPA 4
++R T T K A G G KT+ +PA GL+ V+ + L + AS R PA
Sbjct: 70 VLRRLTTTTTKKKKEAAARGAGKKTTKKPAAAAAAAT-GLLRVLLSKILHVKAASNRKPA 128
Query: 3 A 1
A
Sbjct: 129 A 129
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 421 YLRREDRQPLRPASPAFLPLQTLHSEVV 504
+L DR PL+ SP L L TLHS V
Sbjct: 886 HLIHADRSPLKARSPECLQLATLHSMAV 913
>03_01_0037 -
335646-335855,336480-336686,336962-337129,337377-337973
Length = 393
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 583 PARPLPSMDRRVVRPTNTFLAR 648
P RP+PS+ R+ +PT T +AR
Sbjct: 4 PPRPIPSIHRQPPKPTTTHVAR 25
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 355 HCRGIDPRVECVAGDAQVRLVELVV 281
H G+D RV V DAQ+ LVEL+V
Sbjct: 581 HLAGVDCRVGLVRYDAQLGLVELLV 605
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 29 PNFRLFLTTEISPKLPVNLLRAGRVLVFEP 118
P+ ++FL + + L VNL+ A RV++F+P
Sbjct: 586 PSKQVFLISTRAGNLGVNLVSANRVVIFDP 615
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 503 FEADFALVANVDGASGNQRHITMPDGNRRDHFPQWIEE 616
F DF + +D +G QR I D N + +FP++ E
Sbjct: 124 FLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIE 161
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 210 YSLARSDGGFIMRAAWTVTNVLSKLARIPGGGS 112
Y+++R G +W +S++ R+PGGG+
Sbjct: 56 YAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 88
>04_03_0249 + 13462985-13463170,13463190-13463297
Length = 97
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 602 EGSGRAGSRPALLYDVDYQMPHRHWR 525
EGSGR G R LL+ + H WR
Sbjct: 43 EGSGRCGRRHGLLWAETWPQRHVRWR 68
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 210 YSLARSDGGFIMRAAWTVTNVLSKLARIPGGGS 112
Y+++R G +W +S++ R+PGGG+
Sbjct: 55 YAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,297,161
Number of Sequences: 37544
Number of extensions: 463031
Number of successful extensions: 1497
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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