Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I24
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 258 3e-69
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 258 3e-69
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 115 3e-26
Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical p... 29 3.9
AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic ac... 29 3.9
AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical ... 29 3.9
AF045643-3|AAC02591.1| 272|Caenorhabditis elegans Hypothetical ... 28 6.8
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 27 8.9
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 258 bits (631), Expect = 3e-69
Identities = 119/211 (56%), Positives = 149/211 (70%)
Frame = +2
Query: 26 HPNFRLFLTTEISPKLPVNLLRAGRVLVFEPPPGIRANLLRTFVTVHAARMMKPPSERAR 205
H FRLFLT EI PKLP ++LRA RV+VFEP G++ANLLR+ ++ R+ K P+ER+R
Sbjct: 4067 HAQFRLFLTAEIHPKLPSSILRASRVVVFEPATGLKANLLRSLSSIPPQRLTKAPTERSR 4126
Query: 206 LYFLLAWFHGIVQERLRYVPLGWAKYYEFNESDLRVACDTLDTWIDATAMGRTNLPPEKV 385
LY L+ W H +VQERLRY PLGW+ YEF+++DLRVACDTLD +DA A GR N+ PE++
Sbjct: 4127 LYLLVCWLHALVQERLRYTPLGWSTAYEFSDADLRVACDTLDAAVDAVAQGRPNVEPERL 4186
Query: 386 PWEALVTLLSQCIYGGKIDNLFDQRLLHSFLCKLFTPKSFEADFALVANVDGASGNQRHI 565
PW L TLLSQCIYGGKIDN FDQ LL L LFT KSFE D L+ DG +
Sbjct: 4187 PWTTLRTLLSQCIYGGKIDNQFDQVLLDCVLENLFTAKSFEQDHVLIPKYDGDDS----L 4242
Query: 566 TMPDGNRRDHFPQWIEELSDRQTPSWLGLPN 658
P+ +++D W+EEL + Q P+WLGLPN
Sbjct: 4243 FTPNMSKKDQMIGWVEELKNEQLPAWLGLPN 4273
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 258 bits (631), Expect = 3e-69
Identities = 119/211 (56%), Positives = 149/211 (70%)
Frame = +2
Query: 26 HPNFRLFLTTEISPKLPVNLLRAGRVLVFEPPPGIRANLLRTFVTVHAARMMKPPSERAR 205
H FRLFLT EI PKLP ++LRA RV+VFEP G++ANLLR+ ++ R+ K P+ER+R
Sbjct: 4067 HAQFRLFLTAEIHPKLPSSILRASRVVVFEPATGLKANLLRSLSSIPPQRLTKAPTERSR 4126
Query: 206 LYFLLAWFHGIVQERLRYVPLGWAKYYEFNESDLRVACDTLDTWIDATAMGRTNLPPEKV 385
LY L+ W H +VQERLRY PLGW+ YEF+++DLRVACDTLD +DA A GR N+ PE++
Sbjct: 4127 LYLLVCWLHALVQERLRYTPLGWSTAYEFSDADLRVACDTLDAAVDAVAQGRPNVEPERL 4186
Query: 386 PWEALVTLLSQCIYGGKIDNLFDQRLLHSFLCKLFTPKSFEADFALVANVDGASGNQRHI 565
PW L TLLSQCIYGGKIDN FDQ LL L LFT KSFE D L+ DG +
Sbjct: 4187 PWTTLRTLLSQCIYGGKIDNQFDQVLLDCVLENLFTAKSFEQDHVLIPKYDGDDS----L 4242
Query: 566 TMPDGNRRDHFPQWIEELSDRQTPSWLGLPN 658
P+ +++D W+EEL + Q P+WLGLPN
Sbjct: 4243 FTPNMSKKDQMIGWVEELKNEQLPAWLGLPN 4273
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 115 bits (276), Expect = 3e-26
Identities = 67/173 (38%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Frame = +2
Query: 26 HPNFRLFLTTEISPKLPVNLLRAGRVLVFEPPPGIRANLLRTFVTVHAARMMKPPSERAR 205
H NFRL+LTTE + P +L+ + FEPPPG+R NLLRT+ + R K +
Sbjct: 3685 HENFRLWLTTEGDARFPSMMLQQSLKITFEPPPGVRNNLLRTYTQID--RSTKNVIT-CQ 3741
Query: 206 LYFLLAWFHGIVQERLRYVPLGWAKYYEFNESDLRVACDTLDTWIDATAMGRTNLPPEKV 385
F+LAW H ++QER ++P GW K+YEF SD+RVA ++ L K
Sbjct: 3742 SIFVLAWLHALLQERRTFIPQGWTKFYEFGASDVRVAKSFVE-----------QLTANKA 3790
Query: 386 PWEALVTLLSQCIYGGKIDNLFDQRLLHSFLCKLFTPKSF--EADFALVANVD 538
WE + +L IYGG+I+N FD ++L S+L LF + A LV +D
Sbjct: 3791 DWEFVRGILKFVIYGGRIENDFDFKVLDSYLNVLFCDEKINGRAGSQLVKGID 3843
>Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -2
Query: 496 RSEEFAKEGMQETLVEEVVDLPAVDTLRQ----ERHQRFPRYLLGREVSTT 356
R +EF K +T +VVD P+ + R ++ ++F R + R+VS+T
Sbjct: 259 RQKEFGKLQATQTWASDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSST 309
>AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic
acetylcholine receptorlarge isoform protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -2
Query: 496 RSEEFAKEGMQETLVEEVVDLPAVDTLRQ----ERHQRFPRYLLGREVSTT 356
R +EF K +T +VVD P+ + R ++ ++F R + R+VS+T
Sbjct: 259 RQKEFGKLQATQTWASDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSST 309
>AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -2
Query: 496 RSEEFAKEGMQETLVEEVVDLPAVDTLRQ----ERHQRFPRYLLGREVSTT 356
R +EF K +T +VVD P+ + R ++ ++F R + R+VS+T
Sbjct: 259 RQKEFGKLQATQTWASDVVDRPSTQSFRNSKMWKKVKKFSRRSMKRDVSST 309
>AF045643-3|AAC02591.1| 272|Caenorhabditis elegans Hypothetical
protein F58H7.5 protein.
Length = 272
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 523 ECEISFERLRSEEFAKEGMQETLVEEVVDLPAVDTLRQERHQRF 392
E E+ E + S + + + +E + EEV D A + ++ HQ F
Sbjct: 92 EAEMEVEEVDSPQDSPDEFEEDIAEEVKDKSASEEEEEDEHQVF 135
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 118 RFEDQYTSSSQQIDRQLRADLCREEQP 38
R ED+ QQ + + +A +CREE P
Sbjct: 397 RVEDEIFKRRQQDEERFQARMCREESP 423
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,815
Number of Sequences: 27780
Number of extensions: 346679
Number of successful extensions: 992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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