Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I23
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717...    29   2.5  
10_05_0112 + 9268036-9268296,9268600-9268689,9268818-9268896,926...    28   4.3  

>02_02_0581 +
           11770511-11770527,11770754-11771612,11771652-11771749,
           11772903-11773631,11775159-11775231,11775698-11776066,
           11777009-11777038
          Length = 724

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 226 TSRNESSLNKHVTKRTVFFPPVNNQHVRYIKKLR 125
           T++N+  ++   TKR V FP  N  HV Y + +R
Sbjct: 304 TNKNDIGVDSLPTKRGVVFPFRNTHHVSYAEYIR 337


>10_05_0112 +
           9268036-9268296,9268600-9268689,9268818-9268896,
           9269878-9269975
          Length = 175

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 540 GITGIVTYISDGPRSFR*TVQMHTNSKIKR 451
           GITG++ +++D P + R   + H N + +R
Sbjct: 68  GITGMLKFLTDNPEALRELTEEHNNIRRRR 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,121,095
Number of Sequences: 37544
Number of extensions: 215565
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)