Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I23
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical pr...    31   0.73 
U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical p...    29   2.9  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical
           protein F36G9.3 protein.
          Length = 432

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 376 CCSGNTGLIMKITFSRYSHYDVFKK--INHIYEHITQS*ILWIFVKAVLRYATSRNESS 206
           CC    G+++ I FS    YDV  K  I  +Y   T   IL  FV ++LR    + E S
Sbjct: 144 CCLIGGGILIFIVFSVTDSYDVIPKFTIKLLYSMFTILAILSAFVFSMLREPVYKKEKS 202


>U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical
           protein F59A3.9 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 296 SYI*THNTELNSMDFRKGSAPIRDVAKREFPQQTC 192
           S++ TH+ E      RK +A  R V K+E+P  TC
Sbjct: 72  SFVDTHHQE----PLRKAAAQFRAVMKQEYPDSTC 102


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 149 VLIIDGGKKYSSLCDMFVEGTLVSRRRVSEHCLYENP*NSTLCYVFIYMINLFKNI 316
           + II GG  + S+  +++  T++    V+ H  Y      T C++ I +I +   +
Sbjct: 139 IFIIIGGSTFMSITGIYIVLTVILYMAVAHHISYMTTITLTHCWLIIGLIWIISTV 194


>U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical
           protein K11C4.2 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 116 SLFS*LFYIPYVLIIDGGKKYSSLCDMFVEGTLVSRR 226
           SL   + Y+P +L++  G +Y S C +FV      RR
Sbjct: 131 SLIMKIIYVPLLLVVVLGGQYFSTCYLFVYKPHYKRR 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,795
Number of Sequences: 27780
Number of extensions: 228944
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)