Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I21
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.46
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 26 0.80
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 1.1
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 25 1.9
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 1.9
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 24 2.4
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 24 3.2
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 24 3.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 3.2
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 4.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 23 5.6
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 23 5.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 23 5.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 23 5.6
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 23 5.6
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 23 5.6
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 23 7.5
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 22 9.9
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 22 9.9
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 22 9.9
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.9
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 22 9.9
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 22 9.9
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 22 9.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 22 9.9
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 22 9.9
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 0.46
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 157 KKNTTKELEERRLSSPRKKELEKRGLSNL 243
K+ T KE+E+ + + KKE+++R L ++
Sbjct: 288 KRYTRKEMEQMKRRTKEKKEMKRRALYDI 316
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 0.80
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 111 KKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKR 230
+KER ++KK+ +E+K + R K P EE + +++
Sbjct: 286 EKERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKKRK 325
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 1.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 157 KKNTTKELEERRLSSPRKKELEKR 228
KKN E+ R SS K ELEK+
Sbjct: 129 KKNVETEVTSRSTSSQEKDELEKQ 152
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 24.6 bits (51), Expect = 1.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 104 SVEERKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRKEDYQ 238
S EE + E++ + S+ DYQAR RR + +E Q
Sbjct: 153 SDEENSDSSNEREEEVEDDNRSVESYSSSDYQARSRRRFSEETTQ 197
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 93 KSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEE 212
K+ A +++ KKK A +EK+ +G K + AE+
Sbjct: 10 KAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEK 49
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 81 QFLVKSTGASKKERSLTSKKKQACREE 161
Q L T ++++ +LT K+K REE
Sbjct: 450 QLLANITSINERKENLTDKRKSLWREE 476
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 111 KKERSLTSKKKQACREEKYYQGAGRKKTI 197
KK+ KKK C E + G GR+ +
Sbjct: 82 KKKPKCCEKKKPKCCESEQNNGCGRRNQL 110
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 238 LIVLFSPAPSSAGLIVFFLPAPW*YFSSRHACFFFEVS 125
L +F +S GL+V++ P S AC FE+S
Sbjct: 288 LSFVFWSVLTSLGLLVWYFPLWHMGISGYEACILFELS 325
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 3.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 13 KEDCNHRRKKIIYGVLAK*LYCCS 84
KE CN+ +KKI Y +LA +CC+
Sbjct: 2408 KELCNYLKKKICY-ILA---WCCT 2427
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 9 EERRLQPPKEKNYLWCVGQMIVLL 80
+ER L K ++W GQ+IVL+
Sbjct: 12 KERVLPVVKNTQFVWFSGQVIVLI 35
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 138 KKQACREEKYYQGAGRKK 191
+KQA ++ KY+ G G K
Sbjct: 268 RKQATKKSKYFSGEGMTK 285
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 241 GLIVLFSPAPSSAGLIVFFLP 179
G V F A +SAG+ +FF+P
Sbjct: 132 GWQVAFKNALASAGINIFFMP 152
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.0 bits (47), Expect = 5.6
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +3
Query: 24 QPPKEKNYLWCVGQMIVLLQFLVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKP 203
+P +E + GQ L +K + + L K C+E + +GA K
Sbjct: 34 RPVRESKPTYTSGQKHSALLSKLKRSKVTTDFCKLEESKGIICQENLHTEGAKSKTENIS 93
Query: 204 AEEGAGEKRT 233
E+ + ++RT
Sbjct: 94 GEDKSSQRRT 103
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 23.0 bits (47), Expect = 5.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -1
Query: 214 PSSAGLIVFFLPAPW*YFSSRHACFFFEVSD--LSFFDA--PVDFT 89
PSS+GL+ + AP+ +R + +E S+ ++FF A P D T
Sbjct: 241 PSSSGLVSIYAWAPYLIDFNRIRFYNYESSENSVAFFSAINPADGT 286
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 110 EERKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRKEDYQTC 244
++ K+A+ + + +K+ P+ W ++ + G RS K D TC
Sbjct: 890 DDTKVAHACLVSPEAMKKLTPQEWSQKVCHSIGGRSGGKGD--TC 932
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.0 bits (47), Expect = 5.6
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +2
Query: 59 WPNDCTAAVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSWKKEDYQARG---RRSW 220
WP V + G V+ AYL K + + R+W ED G R W
Sbjct: 27 WPKS-QDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDSAPSGCPAERDW 82
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 22.6 bits (46), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 143 TSMSRRKILPRSWKKEDYQARGRRSWRKEDYQTC 244
TS SRRKIL R +K R+ E+ TC
Sbjct: 159 TSASRRKILERRMRKRS-NLSNRQLNTSENNWTC 191
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 101 GSVEERKIAYLEKKTSMSRRK 163
G VEER+IA+L+ + +RK
Sbjct: 458 GFVEEREIAFLQHQIINLKRK 478
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 123 SLTSKKKQACREEKYYQGAGRK 188
S T KKK + +E+ Q AG+K
Sbjct: 158 SQTDKKKTSTVQEEELQNAGKK 179
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 22.2 bits (45), Expect = 9.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 53 P*IIFFLRWLQSSFFP 6
P ++ LRWL++ FP
Sbjct: 131 PWVMVLLRWLRTGIFP 146
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 235 IVLFSPAPSSAGLIVFFLPAPW*YFS 158
I L PAP +A V F P YF+
Sbjct: 764 IKLIPPAPGAAKAAVMFTPPKVHYFT 789
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 160 KNTTKELEERRLSSPRKKELEKRGLSN 240
+NT KELEE R S + + LSN
Sbjct: 85 ENTKKELEEIRKQSTETELRYLKSLSN 111
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 148 HVAKKNTTKELEERRLS 198
H KKN TK+L E L+
Sbjct: 640 HSIKKNLTKQLREAELA 656
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 95 VYGS-VEERKIAYLEKKTSMSRRKILPRSWKKED 193
VY S V R + +EK K+LPR K +D
Sbjct: 291 VYESAVSNRNLENIEKIIKALNIKVLPRDIKSKD 324
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 22.2 bits (45), Expect = 9.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +2
Query: 56 CWPNDCTAAVSC 91
CW +DC V+C
Sbjct: 43 CWHSDCFKCVNC 54
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 62 ANTP*IIFFLRWLQS 18
A TP I F LRW++S
Sbjct: 780 AETPHIEFHLRWMKS 794
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -1
Query: 166 YFSSRHACFFFEVSDLSFFDAPVDFTRNCSSTI 68
+ H C FE+ L+ D F RN +I
Sbjct: 228 FMHKNHLCMVFEMLSLNLRDILKKFGRNVGLSI 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,132
Number of Sequences: 5004
Number of extensions: 14870
Number of successful extensions: 72
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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