Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I21
(244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 29 0.69
03_06_0272 - 32775620-32776501 28 0.91
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170... 28 0.91
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 27 1.6
07_01_0993 - 8377720-8377800,8379924-8380406,8380622-8381132,838... 27 2.1
03_05_0519 - 25131614-25134778 27 2.1
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 2.1
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 27 2.8
12_02_0077 - 13288916-13289659,13289689-13289691 26 3.7
06_03_1255 + 28780181-28781172,28782065-28782932 26 3.7
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 26 3.7
03_02_0661 + 10247128-10247895 26 3.7
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 26 4.9
11_06_0757 + 26964983-26965048,26965470-26965874,26966921-269678... 25 6.4
06_01_0968 + 7470284-7470427,7471555-7471821,7472145-7472537 25 6.4
03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790... 25 6.4
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653... 25 6.4
03_03_0094 + 14378953-14380728 25 6.4
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 25 6.4
10_08_0466 + 18141369-18141432,18141628-18141711,18142603-18142793 25 8.5
07_03_0899 + 22421038-22422642 25 8.5
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 25 8.5
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 25 8.5
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 28.7 bits (61), Expect = 0.69
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 62 PNDCTAAVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRKED 232
PN TAA+ + ER ++ LEKK RR I+ SW E++ G W +++
Sbjct: 394 PNSGTAAML-----EIAER-LSKLEKKGWRPRRTIIVCSWDAEEFALIGSTEWVEDN 444
>03_06_0272 - 32775620-32776501
Length = 293
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 81 QFLVKSTGASKKERSLTSKKKQACR-EEKYYQGAGRKKTIKPAEEGAGEKRTIKP 242
+FL+ S+ A L++++ +AC E + R++ + A G GEKR +P
Sbjct: 164 RFLLPSSAADNLRAFLSAQEGEACGLNETSRRRRRRREKLAEATRGGGEKRREEP 218
>01_06_0655 -
30916396-30916578,30916689-30916748,30916916-30917032,
30917139-30917246,30917301-30917390,30917731-30917799,
30918086-30918178,30918292-30918384,30918540-30918621,
30919467-30919534,30919662-30920684
Length = 661
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 116 RKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRKED 232
++++ L+K+ RR I+ SW E+Y G W +E+
Sbjct: 394 QRLSVLQKQGWRPRRTIIFCSWDAEEYGLTGSTEWVEEN 432
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 102 GASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKR 230
GA K++R ++ A R K + AGR+K + A GAG+++
Sbjct: 40 GAGKRKRRRGGGRRAAGRR-KEEEEAGRRKAGEEARRGAGKRK 81
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 105 ASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKR 230
A ++ R ++A K + AGR+K + A GAG+++
Sbjct: 4 AGRRRRRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRK 45
>07_01_0993 -
8377720-8377800,8379924-8380406,8380622-8381132,
8381174-8381586
Length = 495
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 2 HEGRKKTATTEGKKLFMVCWPNDCTAAVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSW 181
H G TA + + MVCWP ++ + G+V ++ + K + R ++ RS
Sbjct: 368 HSGWNSTAEGVAEGVPMVCWPFFADQQINSRLVGAVWGNRV---DMKDA-CERGVVERSV 423
Query: 182 KKEDYQARGRRSWRK 226
K+ RRS R+
Sbjct: 424 KEAMESGEIRRSARR 438
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 93 KSTGASKKER-SLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKRTIK 239
K+ A K+E+ S + KK+ ++K G+K KP EEG + T K
Sbjct: 201 KAEEAKKEEKKSAEADKKEEKDDKKKSPEKGKKDGEKPKEEGKAKDETKK 250
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 116 RKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRKED 232
++ + L+KK RR I+ +W E+Y G W +E+
Sbjct: 391 QRFSELQKKGWRPRRTIILCNWDAEEYGLVGSTEWVEEN 429
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 93 KSTGASKKERSLTSKKKQACREEKYYQGAGRKKT-IKPAE-EGAGE 224
K ASKK+ S +SKK + E+ +G+ + K+ ++ E +G+GE
Sbjct: 85 KPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVEDDENDGSGE 130
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +3
Query: 6 REERRLQPPKEKNYLWCVGQMIVLLQFLVKSTGASKKERSLTSKKKQACREEKYYQGAGR 185
R+E+ L+ PK++ + + Q LV + +++ +K+ + QG+ +
Sbjct: 65 RQEKFLEGPKDELSVMLISHDYEDFQELVDKAIRLEDKKNKMDNRKRKMTVSQEAQGSSQ 124
Query: 186 KKTIKPAEEG 215
++ IKP + G
Sbjct: 125 RQRIKPLQIG 134
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +3
Query: 27 PPKEKNYLWCVGQMIVLLQFLVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPA 206
PP VG++ V LVK+T ++ +T ++ +E + + +K + P
Sbjct: 62 PPPRSTSSPAVGEVAVKTSLLVKATKLKREAPEVTPAERLLQQEREMIEHLSDRKALMPV 121
Query: 207 EE 212
E
Sbjct: 122 GE 123
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 139 FFEVSDLSFFDAPVDFTRNCSST 71
FF V D SF + + +RNCS T
Sbjct: 434 FFYVQDRSFEECAAECSRNCSCT 456
>03_02_0661 + 10247128-10247895
Length = 255
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 151 VAKKNTTKELEERRLSSPRKKELEK 225
VAK+ LEERRL + R E+E+
Sbjct: 206 VAKQKEATRLEERRLEAMRDLEIER 230
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 157 KKNTTKELEERRLSSPRKKELEK 225
KK KE E+R+L R++ELE+
Sbjct: 524 KKQREKEEEQRKLERDREEELER 546
>11_06_0757 +
26964983-26965048,26965470-26965874,26966921-26967814,
26972063-26972512,26973013-26973637,26994014-26994651,
26994967-26995032
Length = 1047
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 92 EVYGSVEERKIAYLEKKTSMSRRKILPRSWKK 187
E+ E +I LEKKT+ + + L R W++
Sbjct: 845 EIVAGFVESEIIILEKKTTTTTTEQLQRKWEE 876
>06_01_0968 + 7470284-7470427,7471555-7471821,7472145-7472537
Length = 267
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 95 VYG-SVEERKIAYLEKKT-SMSRRKILPRSWKKEDYQARG 208
+YG SV E + A +++K S++ KIL SW +D + G
Sbjct: 152 LYGPSVNEVRTAIMQQKLFSINHIKILESSWDPQDDEFEG 191
>03_06_0008 -
30978448-30978593,30978673-30978733,30978822-30979007,
30979458-30980422,30980716-30980842
Length = 494
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 102 GASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEK 227
G S + ++ Q R+ + AG+K+ PA E GE+
Sbjct: 7 GGGAASSSSSKRRNQQRRQRRKRAAAGKKQGGSPASENNGEE 48
>03_06_0006 +
30963331-30963457,30963751-30964715,30965166-30965351,
30965440-30965500,30965580-30965623
Length = 460
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 102 GASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEK 227
G S + ++ Q R+ + AG+K+ PA E GE+
Sbjct: 7 GGGAASSSSSKRRNQQRRQRRKRAAAGKKQGGSPASENNGEE 48
>03_03_0094 + 14378953-14380728
Length = 591
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 105 ASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKRTIK 239
A + E+S KKK+ + E Y K + E+G EK+ K
Sbjct: 514 AVEGEKSEKKKKKKKDKAESAYADGEVKAELSDGEKGGSEKKKKK 558
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +3
Query: 153 REEKYYQGAGRKKTIKPAEEGAGE-----KRTIKP 242
+++ ++G G+KKTI P G KR +KP
Sbjct: 3 QKQSQFKGQGKKKTIPPNRHGKAPHVRKGKRAVKP 37
>10_08_0466 + 18141369-18141432,18141628-18141711,18142603-18142793
Length = 112
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/61 (21%), Positives = 24/61 (39%)
Frame = +3
Query: 48 LWCVGQMIVLLQFLVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEK 227
LW V M++ L + +T + + + Y+G ++PA G G +
Sbjct: 3 LWKVLLMVIALICALHTTSGRPPVVGYPAPRPNGSSGTRCYEGCNPPGLLRPASSGGGHE 62
Query: 228 R 230
R
Sbjct: 63 R 63
>07_03_0899 + 22421038-22422642
Length = 534
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 238 LIVLFSPAPSSAGLIVFFLPAPW*YFSSRHACFF 137
++VL S AG++ F P W Y + R C F
Sbjct: 158 MLVLSLVTMSVAGVLTVFSPNVWVYAALRFVCGF 191
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 74 TAAVSCEVYGSVEERKI-AYLEKKTSMSRRKILPRSW-KKEDYQARGRRSW 220
T VSC++YG ++RK + M R + L ++ +ED + GR+ +
Sbjct: 1212 TYVVSCQIYGQQKQRKAPEAADIALLMQRNEALRVAFIHEEDVSSDGRKEY 1262
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 111 KKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEG 215
KKE + ++++ +EEK + KK KP EEG
Sbjct: 6 KKEAAKAKEEEKPKQEEKPKEQEEGKKEEKPKEEG 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,122,088
Number of Sequences: 37544
Number of extensions: 103795
Number of successful extensions: 468
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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