Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I21
         (244 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X57130-1|CAA40409.1|  215|Homo sapiens histone H1 protein.             31   0.52 
BC112140-1|AAI12141.1|  215|Homo sapiens histone cluster 1, H1a ...    31   0.52 
BC101593-1|AAI01594.1|  215|Homo sapiens histone cluster 1, H1a ...    31   0.52 
BC069492-1|AAH69492.1|  215|Homo sapiens histone cluster 1, H1a ...    31   0.52 
AF531299-1|AAN06699.1|  215|Homo sapiens histone H1 protein.           31   0.52 
AK126816-1|BAC86706.1|  235|Homo sapiens protein ( Homo sapiens ...    28   4.8  

>X57130-1|CAA40409.1|  215|Homo sapiens histone H1 protein.
          Length = 215

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 87  LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAE--EGAGEKRTIKP 242
           L K+TGASKK      K K+     K  +   + KT+KP +  +   + + +KP
Sbjct: 139 LKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAKAKAVKP 192


>BC112140-1|AAI12141.1|  215|Homo sapiens histone cluster 1, H1a
           protein.
          Length = 215

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 87  LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAE--EGAGEKRTIKP 242
           L K+TGASKK      K K+     K  +   + KT+KP +  +   + + +KP
Sbjct: 139 LKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAKAKAVKP 192


>BC101593-1|AAI01594.1|  215|Homo sapiens histone cluster 1, H1a
           protein.
          Length = 215

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 87  LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAE--EGAGEKRTIKP 242
           L K+TGASKK      K K+     K  +   + KT+KP +  +   + + +KP
Sbjct: 139 LKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAKAKAVKP 192


>BC069492-1|AAH69492.1|  215|Homo sapiens histone cluster 1, H1a
           protein.
          Length = 215

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 87  LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAE--EGAGEKRTIKP 242
           L K+TGASKK      K K+     K  +   + KT+KP +  +   + + +KP
Sbjct: 139 LKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAKAKAVKP 192


>AF531299-1|AAN06699.1|  215|Homo sapiens histone H1 protein.
          Length = 215

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 87  LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAE--EGAGEKRTIKP 242
           L K+TGASKK      K K+     K  +   + KT+KP +  +   + + +KP
Sbjct: 139 LKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAKAKAVKP 192


>AK126816-1|BAC86706.1|  235|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44866 fis, clone BRALZ2014054, moderately
           similar to Rattus norvegicus cenexin 2. ).
          Length = 235

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +2

Query: 80  AVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSWKKEDYQAR 205
           AV C V GSVE   +  LE     S  K+LP  WK E   A+
Sbjct: 46  AVFCLVCGSVEG--LEALEGTRQTSEEKLLPFQWKLEATSAQ 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,389,568
Number of Sequences: 237096
Number of extensions: 536627
Number of successful extensions: 1912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1388364868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)