Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I19
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 264 4e-72
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 216 1e-57
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 210 7e-56
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 209 2e-55
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 175 2e-45
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 147 7e-37
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 126 2e-30
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 79 3e-16
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 76 3e-15
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 27 2.2
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 3.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 6.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.6
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 25 6.6
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 8.7
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 25 8.7
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.7
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 8.7
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 264 bits (648), Expect = 4e-72
Identities = 124/166 (74%), Positives = 143/166 (86%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
FED TS T IKYMTDGML RECL+D L YSVI+LDEAHERT+ TDVLFGLLK V K
Sbjct: 594 FEDKTSRMTQIKYMTDGMLQRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTVLK 653
Query: 191 RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQI 370
RP+LKLIVTSATLDA +FS YF++ PIFTIPGR++PVE++YTK+PE DYLDA+L+TVMQI
Sbjct: 654 RPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYTKQPEADYLDAALMTVMQI 713
Query: 371 HLREPPGDVLLFLTGQEEIDTACEILYERMKSLGQDVPELIILPVY 508
HL E PGD+L+FLTGQEEIDT+CEILYER K LG +PEL+ILPVY
Sbjct: 714 HLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVY 759
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 216 bits (528), Expect = 1e-57
Identities = 92/166 (55%), Positives = 133/166 (80%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
FE+ TS +T+IKY+TDGMLLRE L + DL SYSVI++DEAHERT+HTD+LFGL+K +
Sbjct: 502 FENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARF 561
Query: 191 RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQI 370
RP+LK++++SAT+DA KFS YF EAP+F +PGR +PV++ YT +PE +Y+ A++ T++QI
Sbjct: 562 RPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQI 621
Query: 371 HLREPPGDVLLFLTGQEEIDTACEILYERMKSLGQDVPELIILPVY 508
H +P GD+L+FLTGQ+EI+ E + E + LG+ +PE+I+ P+Y
Sbjct: 622 HTTQPAGDILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIY 667
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 210 bits (514), Expect = 7e-56
Identities = 92/166 (55%), Positives = 134/166 (80%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
FED T P+T+IKYMTDG+LLRE LM +L+ YSVI++DEAHER+++TD+L GLLK+ + +
Sbjct: 575 FEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSR 634
Query: 191 RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQI 370
R ++KL+VTSAT+++ KFS +F AP FTIPGRT+PV++++ K P +DY++A++ V+QI
Sbjct: 635 RRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQI 694
Query: 371 HLREPPGDVLLFLTGQEEIDTACEILYERMKSLGQDVPELIILPVY 508
HL +P GD+L+F+TGQE+I+ CEI+ +R+ L D P L ILP+Y
Sbjct: 695 HLSQPAGDILVFMTGQEDIEATCEIIADRLNQL-HDAPRLSILPIY 739
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 209 bits (511), Expect = 2e-55
Identities = 91/143 (63%), Positives = 118/143 (82%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
FEDC+ P T++KYMTDGMLLRE + D L YS I+LDEAHERT+ TD+L GL+K+ +
Sbjct: 160 FEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATR 219
Query: 191 RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQI 370
RP+LK+IV SATLDA KF +YFF+AP+ +PGRT+PVE+ YT+EPE DYL+A+L TV+QI
Sbjct: 220 RPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQI 279
Query: 371 HLREPPGDVLLFLTGQEEIDTAC 439
H+ E PGD+L+FLTG+EEI+ AC
Sbjct: 280 HVEEGPGDILVFLTGEEEIEDAC 302
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 175 bits (427), Expect = 2e-45
Identities = 81/166 (48%), Positives = 118/166 (71%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
F+D TS +T IKY+TDGMLLRE + D L Y ++LDEAHERT+ TD+L G +K+ ++K
Sbjct: 179 FDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKK 238
Query: 191 RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQI 370
RP L++I+ SATL+A +FS++F A I I GR +PV++ YT PE DYLDA L T+ Q+
Sbjct: 239 RPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIFQL 298
Query: 371 HLREPPGDVLLFLTGQEEIDTACEILYERMKSLGQDVPELIILPVY 508
H + PPGD+L+FLTGQ+EI+ ++ K L ++P++ P++
Sbjct: 299 HTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLF 344
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 147 bits (357), Expect = 7e-37
Identities = 69/168 (41%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
F+ S +T IKYMTDG+LL E D L+ YS+++LDE HERT+ TD+L G+LK+ ++K
Sbjct: 109 FDHNVSEKTKIKYMTDGILLNEIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEK 168
Query: 191 RPELKLIVTSATLDAVKFSQYFFEAPIFT--IPGRTFPVEVLYTKEPETDYLDASLITVM 364
R + +L+++SA++DA K SQ+F + + T I G+ FPVE L+ ++P +Y+D+++ TV+
Sbjct: 169 RNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIETVI 228
Query: 365 QIHLREPPGDVLLFLTGQEEIDTACEILYERMKSLGQDVPELIILPVY 508
I+ PPGD+L+FL+G++EI+ + + + + +D L+ LP++
Sbjct: 229 NINSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLH 276
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 126 bits (304), Expect = 2e-30
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 14/163 (8%)
Frame = +2
Query: 11 FEDCTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQK 190
F+ +P+T IK+MTDG+LLRE D L +YS +++DEAHER+++TD+L GLL + V+
Sbjct: 485 FDSTINPDTAIKFMTDGILLRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRL 544
Query: 191 RPE----------LKLIVTSATLDAVKFSQ----YFFEAPIFTIPGRTFPVEVLYTKEPE 328
R E LKLI+ SATL FS+ + PI I R +PV + + + +
Sbjct: 545 RREMSKSDQKVKPLKLIIMSATLRVTDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTK 604
Query: 329 TDYLDASLITVMQIHLREPPGDVLLFLTGQEEIDTACEILYER 457
DYL + V IH R P G +L+FLTGQ+E++ C++L +R
Sbjct: 605 PDYLQDAFDKVCLIHKRLPAGSILVFLTGQQEVEQLCQMLRKR 647
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 79.4 bits (187), Expect = 3e-16
Identities = 39/101 (38%), Positives = 65/101 (64%)
Frame = +2
Query: 20 CTSPETIIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPE 199
CT P T + Y+T G LR + +++S + +++DE HER+I +D+L + +++ P
Sbjct: 725 CT-PLTPLTYVTTGTFLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLLKQHPH 783
Query: 200 LKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE 322
LK+I+ SATL+A KF YF + + TIPG+T+PV Y ++
Sbjct: 784 LKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLED 824
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 76.2 bits (179), Expect = 3e-15
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = +2
Query: 14 EDCTSPETIIKYMTDGMLLRECLMD-LD-LKSYSVIMLDEAHERTIHTDVLFGLLKQAVQ 187
E S ET++++ T G+LLR L L + S +++DE HER+I D+L LLK +
Sbjct: 665 EKSISKETLLEFCTTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVIS 724
Query: 188 KRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE 322
+ P LK+I+ SAT+++ F YF A I GRTFP++ Y ++
Sbjct: 725 RIPNLKVILMSATVNSDTFKYYFGNAGHLHIHGRTFPIKDYYIED 769
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 364 HNGDERRVQVIRLGFLSIKHLDWKRPAWYSEDRR 263
H G RR +V L + WKR W EDR+
Sbjct: 466 HGGYVRRARVFELDPVERAVRTWKRLEWPPEDRK 499
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -3
Query: 177 CFSSPKSTSVWMVRSWASSNIITEYDFKSRSIRHSRSNIPSVMYLIMVSGL 25
C +SP +S W + + II ++D ++ + S S + L V G+
Sbjct: 108 CCTSPNDSSTWDTLTKLKNEIINDFDKGNKPLLISCIKFISCVILTQVPGI 158
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 6.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 113 IMLDEAHERTIHTDVLFGLLKQAVQKRPELKLI 211
I DE + H L G+LKQAV R LK +
Sbjct: 794 ITFDELLAKVEHKIKLCGILKQAVPFRVRLKYV 826
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -3
Query: 222 AEVTISFSSGRFCTACFSSPKSTSVWMVRSWASSNIITEYDFKSRSIRHSRSNIPSV 52
A VTIS SSG+F + FS+ + + + ++S+ T + ++ + N S+
Sbjct: 3699 ATVTISSSSGQFTHSTFSTGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSI 3755
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 14 EDCTSPETIIKYMT---DGMLLRECLMDLDLKSYSVIM 118
+DCT P ++Y+T +G EC+ D ++S +V+M
Sbjct: 24 DDCTPPNVQLEYLTCPPEGPKAIECVSD-GVRSAAVLM 60
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 311 YTKEPETDYLDASLITVMQIHLREPPGDVLL----FLTGQEEIDTACEILYERMKSLGQ 475
Y P D SL+T +Q+ + GD+L + + D ++ +E++++L Q
Sbjct: 315 YPLPPYCDCTSRSLVTALQVIRQIQNGDLLARYWKYFEESHKFDLNLQVYHEKLRNLVQ 373
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 194 PELKLIVTSATLDAVKFSQYFFEAPIFTIPGRT 292
PE I A FS +F P++TI G T
Sbjct: 344 PENVFITIGAIATIFYFSYFFILIPVYTILGNT 376
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 255 KYWENFTASRVAEVTISFSSGRFCTACFSSPKSTSVWMVRSWASSNII 112
++WE+ + + E SS F+SPK+ +V + S +SSN++
Sbjct: 24 EFWESMSEG-LKEALNLISSDDPTVLVFTSPKTDAVKGIVSRSSSNVV 70
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 279 IVKIGASKKYWENFTASRVAEVTISFSSGRFCTACFSSPK 160
I I + Y+E +TAS ++++ + S+G F + + K
Sbjct: 310 IFHIWHALSYFEEYTASCISDMLLLVSNGEFTKSVICAQK 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,854
Number of Sequences: 5004
Number of extensions: 46870
Number of successful extensions: 171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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