Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I18
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    32   0.070
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.1  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 31.9 bits (69), Expect = 0.070
 Identities = 21/75 (28%), Positives = 42/75 (56%)
 Frame = +3

Query: 15  SNESKLLVTFLL*YKYLIISALSTFLNAQSII*NLYIRFYFVYYINFSFKKKHLNAYLLY 194
           S +++L++++ L  K L IS +ST   + S +  + I    + +I+F F ++    + + 
Sbjct: 451 SEDAELVLSYDLMSKSLFISVVSTLNFSLSFV--VAILLVPLQFISFRFNRRLSLLFAVL 508

Query: 195 THFS*KYFICNYYKI 239
           T+FS   F+C+  KI
Sbjct: 509 TYFSTFIFLCSLSKI 523


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 469 PSTVIRISSFYLLTYSPMQ 525
           PST IR  ++YLLT SP++
Sbjct: 18  PSTPIREENYYLLTSSPIE 36


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 278 INNRC-LFERQRCCDLI 231
           I+N+C L+ERQ+C D I
Sbjct: 688 IDNKCYLYERQKCADAI 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,763
Number of Sequences: 5004
Number of extensions: 43752
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)