Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I16
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   1.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   9.4  

>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 176 ALWPFLGICAEVFVLCAIILVYEKRRTKPDNDDSDTE 286
           AL   LG  A +  +C+ +L YE +R   +N DS+++
Sbjct: 2   ALKELLGSDAPLEKVCSALLEYESKRKSSENIDSESK 38


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 408 NDFARRYTDAMPT 370
           NDF RRY  +MPT
Sbjct: 475 NDFCRRYDSSMPT 487


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 237 TRMMAQSTNTSAQMPRNGHSAAYLSLTRSMAESATPPAGT 118
           T  +  STNTS  +P N +S   +  T S   +  P   T
Sbjct: 214 TTHITTSTNTSTVIPSNPNSVFLVDCTHSQCPTDLPNIAT 253


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
            Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 143  SAMLRVKDKYAALWPFLGI--CAEVFVLC 223
            +A LR   K+A+ W FLGI    E  ++C
Sbjct: 988  AASLRQALKFASQWSFLGIVSACEPLIMC 1016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,032
Number of Sequences: 5004
Number of extensions: 16589
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)