Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I16
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 104 GVYACVPAGGVADSAMLRVKDKYAALWPFLGICAEVFVLCAIILVYEKRRTKPDNDDSDT 283
           GVYA + AG  +DS +L +  K+      LG+       C++ +  ++ +  P    S+ 
Sbjct: 481 GVYAWIGAGRDSDSRLLDLCTKFLMHKDSLGLSTATST-CSLAVAKQQNQV-PLTSSSNV 538

Query: 284 ENH 292
            N+
Sbjct: 539 NNN 541


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 377 CRRHADATTTLRRHYADAARQS 312
           CRR+     +L+RH+ D   QS
Sbjct: 11  CRRNFSCYYSLKRHFQDKHEQS 32


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 92  RGDAGVYAC 118
           +GDAGVY C
Sbjct: 581 KGDAGVYTC 589


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 92  RGDAGVYAC 118
           +GDAGVY C
Sbjct: 581 KGDAGVYTC 589


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 236 VYEKRRTKPDNDDSDTENHDQKK 304
           +YE R+ + +N + DTE  D  +
Sbjct: 30  IYELRQIEEENIEPDTELMDSNE 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,532
Number of Sequences: 438
Number of extensions: 1223
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)