Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I15
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    28   0.73 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.97 
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   2.2  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   5.2  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   9.0  

>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 69  YKTCRDFAEGELKPNAAKYDREHLYPE-NAIKKMGELGLMAIAAPEELGGAGL 224
           YK+  DF EG+ +  A +Y +E+ Y     + K+ ++       P +L  A L
Sbjct: 219 YKSPDDFPEGDFRRKAPRYQKENFYKNLELVTKIEKIATANNITPGQLSLAWL 271


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 433 ASEPLPGSDKAKQPTMSPLQNGVT 362
           ASEPLP S+    P M  L+NG +
Sbjct: 308 ASEPLPSSNIIPNPAMERLKNGAS 331


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 433 ASEPLPGSDKAKQPTMSPLQNGVTNSFFCFSLPQCS 326
           +++P   S     P +   QN  TN+ F F +PQ S
Sbjct: 322 STKPEANSGNVYSPVVFQKQNNHTNTIFTFDVPQVS 357


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 433 ASEPLPGSDKAKQPTMSPLQNGVTNSFFCFSLPQCS 326
           ++ P   S     P +   QN  TN+ F F +PQ S
Sbjct: 242 SANPSSNSGNVYSPVVFQKQNNHTNTIFTFDVPQVS 277


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 433 ASEPLPGSDKAKQPTMSPLQNGVTNSFFCFSLPQCS 326
           ++ P   S     P +   QN  TN+ F F +PQ S
Sbjct: 242 SANPSSNSGNVYSPVVFQKQNNHTNTIFTFDVPQVS 277


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 93  EGELKPNAAKYDREHLYPE-NAIKKMGELGLMAIAAPEELGGAGLDYLAYAIALEEISRG 269
           +G+ + N  K + +   P  NA+    +L     AAP  +G   L YL  A+  + IS  
Sbjct: 691 DGDKERNEEKKEEKETLPVLNALTLRSDLARAPRAAPLLVGNIRLAYLRKALLDQGISAE 750

Query: 270 CASAGVIM 293
               GV++
Sbjct: 751 LKGEGVLL 758


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 481 KIHLSPEVLAMVHAAPASEPLPGSDKAKQPTMSPL-QNGVT 362
           K+ +S +V    H+AP +         +QPT  P+ +N VT
Sbjct: 31  KLSISTDVKKPSHSAPVTPVRSARSSMEQPTFRPVAKNSVT 71


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 439 APASEPLPGSDKAKQPTMSPLQNGVT-NSFFCFSLPQ 332
           AP S    GSD   +P  +P   G++ N+FFC  LP+
Sbjct: 191 APISLSSEGSDYFSRPPPTPNVAGLSLNNFFC-PLPE 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,784
Number of Sequences: 5004
Number of extensions: 44856
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)