Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_I15
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 113 8e-26
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 84 6e-17
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 77 7e-15
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 52 2e-07
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 51 5e-07
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 44 7e-05
12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000 33 0.18
10_01_0279 - 2938189-2938697,2938800-2938965 30 1.3
10_01_0277 - 2929266-2929686,2929735-2929774,2929885-2930050 30 1.3
10_01_0276 - 2921149-2921657,2921760-2921910 30 1.3
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 30 1.3
10_01_0284 + 2969965-2970136,2970240-2970703 28 4.0
10_01_0280 - 2945929-2946437,2946541-2946649 28 4.0
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 28 4.0
04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378 28 5.2
03_01_0564 - 4176177-4178096 28 5.2
09_04_0430 + 17502387-17503505 27 6.9
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 27 6.9
04_04_0336 + 24500665-24502647 27 6.9
04_01_0145 + 1689148-1689261,1689431-1689621,1689699-1689796,169... 27 6.9
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 27 6.9
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 27 9.1
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 113 bits (272), Expect = 8e-26
Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 5/171 (2%)
Frame = +3
Query: 15 ATRCIASLSAL--PDTYQMLYKTCRDFAEGELKPNAAKYDREHLYPE--NAIKKMGELGL 182
A R +S S+L DT + ++ FA+ + P+AA D + +P+ N K MG+ L
Sbjct: 19 ARRLYSSASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNL 78
Query: 183 MAIAAPEELGGAGLDYLAYAIALEEISRGCASAGVIMSVNNSLYLGPLLHWGNEKQKKEF 362
+ APEE GG GL Y+ + IA+EEISR S G+ +++L + L+ G+ QK ++
Sbjct: 79 HGLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKY 138
Query: 363 VTPFCNGDIVGCFALSEPGNGSDA-GAACTIAKTSGDKWILNGTKCWITNG 512
+ +G+ VG A+SEP +GSD C K G +++NG K W TNG
Sbjct: 139 LPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGG-YVINGNKMWCTNG 188
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 84.2 bits (199), Expect = 6e-17
Identities = 52/150 (34%), Positives = 78/150 (52%)
Frame = +3
Query: 60 QMLYKTCRDFAEGELKPNAAKYDREHLYPENAIKKMGELGLMAIAAPEELGGAGLDYLAY 239
Q + K R E E+ P A Y + +P +AI K+ LG+ A + G GL A
Sbjct: 55 QSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGV-AGGTIKGYGCPGLSITAS 113
Query: 240 AIALEEISRGCASAGVIMSVNNSLYLGPLLHWGNEKQKKEFVTPFCNGDIVGCFALSEPG 419
AI + EI+R AS + V++SL + + G+E QK++++ VGC+AL+EP
Sbjct: 114 AITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPN 173
Query: 420 NGSDAGAACTIAKTSGDKWILNGTKCWITN 509
+GSDA + T A W ++G K WI N
Sbjct: 174 HGSDASSLITTATKVPGGWHIDGQKRWIGN 203
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 77.4 bits (182), Expect = 7e-15
Identities = 50/143 (34%), Positives = 72/143 (50%)
Frame = +3
Query: 81 RDFAEGELKPNAAKYDREHLYPENAIKKMGELGLMAIAAPEELGGAGLDYLAYAIALEEI 260
R F E E+ P +K+ + +P + I KM LG+ A + G GL A A+ EI
Sbjct: 73 RQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGI-AGGTIKGYGCPGLSGPACAMCFLEI 131
Query: 261 SRGCASAGVIMSVNNSLYLGPLLHWGNEKQKKEFVTPFCNGDIVGCFALSEPGNGSDAGA 440
+R AS V + L + + G+E QK++++ P V +ALSEP +GSDA +
Sbjct: 132 ARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASS 191
Query: 441 ACTIAKTSGDKWILNGTKCWITN 509
T A+ WILNG K W N
Sbjct: 192 LNTTARKVPGGWILNGQKRWPAN 214
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 52.4 bits (120), Expect = 2e-07
Identities = 45/156 (28%), Positives = 68/156 (43%)
Frame = +3
Query: 45 LPDTYQMLYKTCRDFAEGELKPNAAKYDREHLYPENAIKKMGELGLMAIAAPEELGGAGL 224
L D + L K R E E+ P +Y + +P +AI K+ LGL G
Sbjct: 47 LTDEEKTLRKKVRGIMEREIAPIMTEYWEKAEFPFHAIPKLATLGLAG-------GTTKT 99
Query: 225 DYLAYAIALEEISRGCASAGVIMSVNNSLYLGPLLHWGNEKQKKEFVTPFCNGDIVGCFA 404
D Y ++ + +S S+ + G+E QK++++ +GC+A
Sbjct: 100 DQDNYFLS-----------SLFLSFQFSVQIALC---GSEAQKQKYLPSLTQFRTIGCWA 145
Query: 405 LSEPGNGSDAGAACTIAKTSGDKWILNGTKCWITNG 512
L+EP GSDA + T A W L+G K WI NG
Sbjct: 146 LTEPDYGSDASSLRTAATKVPGGWHLDGQKRWIGNG 181
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 51.2 bits (117), Expect = 5e-07
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +3
Query: 192 AAPEELGGAGLDYLAYAIALEEISRGCASAGVI-MSVNNSLYLGPLLHWGNEKQKKEFVT 368
++ E L GAGL L Y E + R + + ++ + LL +G ++Q+K+++
Sbjct: 460 SSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNMEVLLRYGTKEQQKQWLV 519
Query: 369 PFCNGDIVGCFALSEPG-NGSDA-GAACTIAKTSGDKWILNGTKCWITNG 512
P G I FA++EP SDA C+I++ GD +++NGTK W T+G
Sbjct: 520 PLLEGKIRSGFAMTEPQVASSDATNIECSISR-QGDFYVINGTKWW-TSG 567
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 44.0 bits (99), Expect = 7e-05
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Frame = +3
Query: 225 DYLAYAIALEEISRGCASAGVIMSVNNSLYLGPLLHWGNEKQKKEFVTPFCNGDIVGCFA 404
D Y +E S GV + V SL+ G +++ G +K + F N D GCFA
Sbjct: 131 DPAEYFAVMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFA 190
Query: 405 LSEPGNGSDAGAACTIAKTS--GDKWILN-----GTKCWITN 509
++E +GS+ A T A D++I+N K WI N
Sbjct: 191 MTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGN 232
>12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000
Length = 215
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 176 GPHGYSSTRRTWWCRPGLSCLCYSPRRDISR 268
G G +STRR+WW R GL+ C +P DIS+
Sbjct: 51 GKSGITSTRRSWW-REGLA--CEAPINDISK 78
>10_01_0279 - 2938189-2938697,2938800-2938965
Length = 224
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 478 IHLSPEVLAMVHAAPASEPLPGSDKAK-QPTMSPLQNGV 365
+H + + A +H+A +S P PG + +K P S NGV
Sbjct: 93 LHGAADCFAQLHSAASSTPCPGQEPSKIVPLSSTTDNGV 131
>10_01_0277 - 2929266-2929686,2929735-2929774,2929885-2930050
Length = 208
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 478 IHLSPEVLAMVHAAPASEPLPGSDKAK-QPTMSPLQNGV 365
+H + + A +H+A +S P PG + +K P S NGV
Sbjct: 77 LHGAADCFAQLHSATSSTPCPGQEPSKIVPLSSTTDNGV 115
>10_01_0276 - 2921149-2921657,2921760-2921910
Length = 219
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 478 IHLSPEVLAMVHAAPASEPLPGSDKAK-QPTMSPLQNGV 365
+H + + A +H+A +S P PG + +K P S NGV
Sbjct: 88 LHGAADCFAQLHSAASSTPCPGQEPSKIVPLSSTTDNGV 126
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 336 GNEKQKKEFVTPFCNGDIVGCFALSEPGNGSDAGAACTIA 455
G E+Q+K+++ I+GC+A +E G+GS+ T A
Sbjct: 119 GTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTA 158
>10_01_0284 + 2969965-2970136,2970240-2970703
Length = 211
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 478 IHLSPEVLAMVHAAPASEPLPGSDKAK-QPTMSPLQNG 368
+H + + A +H+A +S P PG + +K P S NG
Sbjct: 95 LHGAADCFAQLHSAESSTPCPGQEPSKIVPLSSTTDNG 132
>10_01_0280 - 2945929-2946437,2946541-2946649
Length = 205
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 478 IHLSPEVLAMVHAAPASEPLPGSDKAK-QPTMSPLQNG 368
+H + + A +H+A +S P PG + +K P S NG
Sbjct: 74 LHGAADCFAQLHSATSSTPCPGQEPSKIVPLSSTTDNG 111
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 466 PEVLAMVHAAPASEPLPGSDKAKQPTMSPLQNGVTNSFFCFSLPQCSNGPRYKELFTDII 287
P V++ PA+EP+ G + A P +GVT S ++P S+ + ++
Sbjct: 184 PSVISTEQLNPAAEPVVGVEAAPVTVAEP--DGVTTSAITANIPSPSDDINLDDWLNELF 241
Query: 286 TP 281
P
Sbjct: 242 DP 243
>04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378
Length = 419
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 242 SISKIVQACTTKFF-WCCYSHEAQFTHFLYGIFW 144
+IS+ KF+ WC H HF+ G FW
Sbjct: 138 TISEARHKNLVKFYGWCIRGHSWNIIHFMCGWFW 171
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 198 PEELGGAGLDYLAYAIALEEISRGCASAGVIMSVNNSLYLGPLLHWGN 341
P LGG + + + I E+ + GVI+ +N S+ +L WGN
Sbjct: 472 PWVLGGFVMSIIWFYIIANELVALLVAFGVILGINPSILGLTVLAWGN 519
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 459 FWQWYMQHQHQNHYPALIKQNNLLCHHCRMV*QTLSSVSHYPNVVMGQDIKNC 301
FW M H + Y L + +LC CR ++ P +V G D+ C
Sbjct: 230 FWTVCMSCCHIHQYDRLYEARKVLCPSCRQP-FVAEEMAEPPPIVPGTDMYYC 281
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +3
Query: 276 SAGVIMSVNNSLYLGPLLHWGNEKQKKEFVTPFCNGDIVGCFALSEPGNGSDAGAACTIA 455
S + + V+ L+ + G ++ ++++ N I GCF+++E G+GS+ T+A
Sbjct: 153 SLAIKIGVHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIETVA 212
>04_04_0336 + 24500665-24502647
Length = 660
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 375 CNGDIVGCFALSEPGNGSDAGAACTIAKTSGD 470
CNG G + E G+G + C++A++S D
Sbjct: 183 CNGGASGGQSTMEEGSGQQLASRCSLAQSSTD 214
>04_01_0145 +
1689148-1689261,1689431-1689621,1689699-1689796,
1693288-1693443,1694456-1695075,1695204-1695247,
1695361-1695763,1696295-1696466,1696550-1697079
Length = 775
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 180 LMAIAAPEELGGAGLDYLAYAIALEEISRGCASAGVIM 293
L+A+ A +E G G+ + AYA + ++ C S ++
Sbjct: 449 LLAVNALKEAGAKGIIFAAYAFDILDVVESCGSMPCVL 486
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 242 SISKIVQACTTKFFWCCYSH 183
+I KIV T + FW CY H
Sbjct: 74 NIKKIVDFSTVESFWVCYCH 93
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 66 LYKTCRDFAEGELKPNAAKYDREHLYPENAIKKMGELGLMAIAAPEELGGAGL 224
L TC +G P+AA++ +HL P + + AAP E GL
Sbjct: 85 LAATCIGVFDGHAGPDAARFACDHLLPNLRGEHRPPSPFLPAAAPPETRDLGL 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,854
Number of Sequences: 37544
Number of extensions: 299104
Number of successful extensions: 884
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -