Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I12
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    28   3.0  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm rece...    27   9.2  

>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 204 SCCQIGCVDHEGNGIDV*MVTVVEQKGNGEVMVTY 308
           +CC IGC   + N I++  V   +  G  E  + Y
Sbjct: 196 NCCDIGCEKSKSNSIEIANVFKPDYAGGNEFSIKY 230


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 NEFLTDIFRVITDNNNHVKHSVNHFRILYRN 473
           N F  D++  +T NNN +++S N+  +L  N
Sbjct: 721 NNFGKDLWTAVTLNNNIIQYSQNNAAVLKTN 751


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 NEFLTDIFRVITDNNNHVKHSVNHFRILYRN 473
           N F  D++  +T NNN +++S N+  +L  N
Sbjct: 734 NNFGKDLWTAVTLNNNIIQYSQNNAAVLKTN 764


>AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm
           receptor protein 196 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 304 VTITSPFPFCSTTVTIYTSI-PFPS 233
           + + S +PF S T+ +YT+I P P+
Sbjct: 284 IDLDSKYPFVSVTIALYTAIDPLPT 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,541
Number of Sequences: 27780
Number of extensions: 165272
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)