Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I12
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 123 LCSLKLIQTGKKYLSMLLERQKFPLTCSCCQIG 221
           +CS   IQ+G+  + M     + P  C  C  G
Sbjct: 180 VCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKG 212


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 420 NNNHVKHSVNHFRILYRN 473
           NNN+  +  N+++ LY+N
Sbjct: 102 NNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 420 NNNHVKHSVNHFRILYRN 473
           NNN+  +  N+++ LY+N
Sbjct: 102 NNNYNNNYNNNYKKLYKN 119


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  TFILHFINVTLSCSLSSWTF*G 89
           TFI++ +++ ++  + +W F G
Sbjct: 303 TFIMNTVSILVTVIIINWNFRG 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,210
Number of Sequences: 438
Number of extensions: 1861
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)