Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I09
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392     31   0.54 
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   1.2  
10_05_0013 + 7986281-7986434,7986664-7986743,7987583-7987656,798...    28   3.8  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    28   3.8  
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156...    27   8.7  
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161...    27   8.7  
04_04_0236 + 23825368-23825763,23826229-23828667                       27   8.7  

>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
          Length = 313

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 123 DKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGFVQYLFRVKSRFWIFHSAP 290
           D  + + +PF    CD    + KN ID    LK+ L  +Q++F ++ R +  H  P
Sbjct: 17  DCNQIDFLPFTCDRCDHNCCFNKNEIDLRQNLKLGLR-MQWVFCLQHRSYTSHQCP 71


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 191  ERYRLYGYTQNKTWFCPIFV*SEKSLLDLPFRAGAVKHV 307
            E+  +Y Y  NK     +F  + KSLLD P R G +K V
Sbjct: 3068 EKLLIYEYLANKGLDAILFDGARKSLLDWPTRFGIIKGV 3106


>10_05_0013 +
           7986281-7986434,7986664-7986743,7987583-7987656,
           7988186-7988252
          Length = 124

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 340 VRLIRICWRCCIQKRCWKIWVCRCQ 414
           VRL R C   CI +R + +W CRC+
Sbjct: 18  VRLSRRCPHRCIPRRAY-LWWCRCR 41


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 112 YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW 210
           YIS+T   T V  L  LD +H++ +K     LW
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLW 373


>12_01_0207 -
           1559491-1559544,1559806-1560161,1560244-1560363,
           1561523-1561568,1561741-1561858,1561981-1562093,
           1562586-1562658,1562743-1562882,1563005-1563075,
           1563228-1563396,1563594-1563659,1564052-1564150,
           1564271-1564444,1564720-1564798,1564901-1565007,
           1565391-1565435
          Length = 609

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 319 HCQENVFNSTGAEWKIQKRLFTLNKYWTKPSFILSVS 209
           H Q  +F+S G E K+ +RL    + W   SF+ S++
Sbjct: 166 HVQVLIFDSRGTESKLYQRLEWTCEVWDFSSFLNSLA 202


>11_01_0204 -
           1612505-1612636,1612809-1612926,1613050-1613162,
           1613640-1613712,1613797-1613936,1614059-1614129,
           1614262-1614430,1614625-1614690,1615081-1615179,
           1615298-1615471,1615745-1615823,1615929-1616035,
           1616395-1616439
          Length = 461

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 319 HCQENVFNSTGAEWKIQKRLFTLNKYWTKPSFILSVS 209
           H Q  +F+S G E K+ +RL    + W   SF+ S++
Sbjct: 166 HVQVLIFDSRGTESKLYQRLEWTCEVWDFSSFLNSLA 202


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 78  YDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 197
           +DT +KL+S +  +DD   +++ P V +G   F++   NV
Sbjct: 602 FDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,280,703
Number of Sequences: 37544
Number of extensions: 175756
Number of successful extensions: 378
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)