Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I09
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    29   1.1  
AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    27   4.4  
Z68159-6|CAA92287.5|  485|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 304 VFNSTGAEWKIQKRLFTLNKYWTKPSFILSVSIKSITFFSYLS 176
           V NST +EW + K +++L  Y   P F  + ++      S LS
Sbjct: 105 VLNSTKSEWLVNKTIYSLEFYSDDPYFYFNYTVSICPENSILS 147


>AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical
           protein Y40H7A.6 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 LFTLNKYWTKPSFILSVSIKSITFFS 185
           L  +N  W K +F LS SI  +TFF+
Sbjct: 21  LEAMNSIWIKINFFLSTSIILLTFFA 46


>AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical
           protein W10D9.3 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 287 RGME-DPEATFHSKQILDKTKFYFECIHKVDNVLFIFVE 174
           +G+E D     +S +ILD   F+FE ++ +DN +  FVE
Sbjct: 95  KGIEIDTSKWENSLKILDFRAFFFENLNLLDNSMDFFVE 133


>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 260 FHSKQILDKTKFYFECIHKVDNVLFIFVEC 171
           F+  Q++ +T     C+H + NVL + V C
Sbjct: 284 FNGSQVIVETFLVLACLHSLINVLVLVVTC 313


>Z68159-6|CAA92287.5|  485|Caenorhabditis elegans Hypothetical
           protein C33D9.6 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 290 RRGMEDPEATFHSKQILDKTKF 225
           RR ++DPE  FH+ + LD  KF
Sbjct: 363 RRMVDDPEDLFHNYEDLDDAKF 384


>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 114 HFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIK 227
           HF D   Y ++   K  CD FD   K++ D  + ++IK
Sbjct: 123 HFQDALHYPKVDDFKIECDEFDL--KSICDDFEGMQIK 158


>U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical
           protein F12A10.4 protein.
          Length = 658

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 253 LNKYWTKPSFILSVSIKSITF-FSYLSNV-SHPVL 155
           LN  WTKPS  +S S  S T+ + +L+ + +H +L
Sbjct: 169 LNNSWTKPSDPISTSNSSTTYSYPFLTKILAHIIL 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,801
Number of Sequences: 27780
Number of extensions: 171786
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)