Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_I08
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    35   0.007
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   4.1  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   4.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   4.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.4  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.4  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -1

Query: 534 LQCETCGSRCSVASIKSGFQAVTGKR 457
           + CE CGS  SV +IK+G+QA  GKR
Sbjct: 292 MTCEACGSVRSVQAIKTGYQAQIGKR 317


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 491 SNLVSKQLPGNVLLSVQRLHRVLVSSVNGTIKNLG 387
           ++L S +  GNVL S+QRLH     ++NG    LG
Sbjct: 626 ASLSSSRSRGNVLESLQRLHE--SDNLNGFFGRLG 658


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 452 LSVQRLHRVLVSSVNGTIKNLGYIQYLLTSF 360
           L VQ LH++ + SVNG  K L  I+  +T +
Sbjct: 247 LMVQLLHKLSIRSVNGNEKLLKVIKNPVTDY 277


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 491 SNLVSKQLPGNVLLSVQRLHRVLVSSVNGTIKNL 390
           SNL +  L GN+LL+V R   V  + V G  ++L
Sbjct: 101 SNLATINLVGNILLAVVRAPMVKAADVFGRSESL 134


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 424  NTLCSLCTDSSTFPGNCL 477
            N L SLCT+  T PGN +
Sbjct: 1622 NVLNSLCTEIMTLPGNVI 1639


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 214 VEKVLQMK*NC*L-LLNSIDHVLKLQVLLIKLCNII*MYPIL 92
           +EK++    +C   LL  + H+L+  + L ++C ++  YP L
Sbjct: 136 IEKIISDPSSCNSQLLIPLQHLLRYPIHLARVCKMLRKYPFL 177


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 110 LNVPHSKTYIYIYSSPVLFSLIHNV 36
           LN+P  K     YS PV  +L HN+
Sbjct: 402 LNIPPEKALQLRYSIPVFQNLEHNI 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,127
Number of Sequences: 5004
Number of extensions: 36066
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)